protocols::stepwise::sampling::rna::SlicedPoseJobParameters Class Reference

#include <StepWiseRNA_Clusterer.hh>

Public Member Functions
	SlicedPoseJobParameters ()
virtual	~SlicedPoseJobParameters ()
void	setup (protocols::stepwise::sampling::rna::StepWiseRNA_JobParametersCOP &job_parameters)
core::pose::Pose	create_sliced_pose (core::pose::Pose const &working_pose)

Public Attributes
utility::vector1< core::Size >	sliced_pose_best_alignment
utility::vector1< core::Size >	sliced_pose_calc_rms_res
std::map< core::Size, core::Size >	sliced_pose_full_to_sub
std::map< core::Size, bool >	sliced_pose_is_prepend_map

Private Attributes
utility::vector1< bool >	is_sliced_res_
utility::vector1< core::Size >	working_to_sliced_res_map_
utility::vector1< core::Size >	sliced_to_working_res_map_
utility::vector1< std::pair < core::Size, core::Size > >	delete_res_range_list_
bool	is_setup_

Constructor & Destructor Documentation

protocols::stepwise::sampling::rna::SlicedPoseJobParameters::SlicedPoseJobParameters ( )

inline

protocols::stepwise::sampling::rna::SlicedPoseJobParameters::~SlicedPoseJobParameters ( )

virtual

Member Function Documentation

core::pose::Pose protocols::stepwise::sampling::rna::SlicedPoseJobParameters::create_sliced_pose

(

core::pose::Pose const &

working_pose

)

References core::pose::Pose::total_residue(), and utility_exit_with_message.

void protocols::stepwise::sampling::rna::SlicedPoseJobParameters::setup

(

protocols::stepwise::sampling::rna::StepWiseRNA_JobParametersCOP &

job_parameters

)

References protocols::stepwise::sampling::rna::apply_full_to_sub_mapping(), calc_rms_res, nres, protocols::stepwise::sampling::rna::output_is_prepend_map(), protocols::stepwise::sampling::rna::output_pair_size(), protocols::stepwise::sampling::rna::output_seq_num_list(), protocols::stepwise::sampling::rna::output_title_text(), size(), sub_to_full(), and core::chemical::rna::TR.

Member Data Documentation

utility::vector1< std::pair < core::Size, core::Size > > protocols::stepwise::sampling::rna::SlicedPoseJobParameters::delete_res_range_list_

private

bool protocols::stepwise::sampling::rna::SlicedPoseJobParameters::is_setup_

private

utility::vector1< bool > protocols::stepwise::sampling::rna::SlicedPoseJobParameters::is_sliced_res_

private

utility::vector1< core::Size > protocols::stepwise::sampling::rna::SlicedPoseJobParameters::sliced_pose_best_alignment

utility::vector1< core::Size > protocols::stepwise::sampling::rna::SlicedPoseJobParameters::sliced_pose_calc_rms_res

std::map< core::Size, core::Size > protocols::stepwise::sampling::rna::SlicedPoseJobParameters::sliced_pose_full_to_sub

std::map< core::Size, bool > protocols::stepwise::sampling::rna::SlicedPoseJobParameters::sliced_pose_is_prepend_map

utility::vector1< core::Size > protocols::stepwise::sampling::rna::SlicedPoseJobParameters::sliced_to_working_res_map_

private

utility::vector1< core::Size > protocols::stepwise::sampling::rna::SlicedPoseJobParameters::working_to_sliced_res_map_

private

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/stepwise/sampling/rna/StepWiseRNA_Clusterer.hh
• symlinks/rosetta/src/protocols/stepwise/sampling/rna/StepWiseRNA_Clusterer.cc