protocols::stepwise::sampling::protein::StepWiseProteinJobParameters Member List

This is the complete list of members for protocols::stepwise::sampling::protein::StepWiseProteinJobParameters, including all inherited members.

actually_moving_res() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
apply_full_to_sub_mapping(utility::vector1< Size > const &res_vector)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
apply_full_to_sub_mapping(Size const res) const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
chain_boundaries() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
chain_boundaries_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
create_sub_to_full_map(std::map< core::Size, core::Size > const &full_to_sub) const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
first_chain_break_res() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
first_chain_break_res_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
full_to_sub()	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
full_to_sub_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
gap_size() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
gap_size_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
is_internal() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
is_internal_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
is_moving_res() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
is_moving_res_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
is_pre_proline() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
is_prepend() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
is_prepend_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
is_working_res() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
is_working_res_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
moving_pos() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
moving_pos_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
partition_definition() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
partition_definition_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
sequence() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
sequence_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
set_chain_boundaries(utility::vector1< std::pair< core::Size, core::Size > > const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_first_chain_break_res(Size const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_full_to_sub(std::map< core::Size, core::Size > const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_gap_size(Size const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_is_internal(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_is_moving_res(ObjexxFCL::FArray1D< core::Size > const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_is_prepend(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_is_working_res(ObjexxFCL::FArray1D< core::Size > const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_moving_pos(utility::vector1< core::Size > const &moving_pos)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_partition_definition(ObjexxFCL::FArray1D< bool > const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_sequence(std::string const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_which_chain_has_moving_res(Size const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_working_bridge_res(utility::vector1< core::Size > const &working_bridge_res)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_working_calc_rms_res(utility::vector1< core::Size > const &working_calc_rms_res)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_working_fixed_res(utility::vector1< core::Size > const &working_fixed_res)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_working_moving_res_list(utility::vector1< core::Size > const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_working_moving_suite_list(utility::vector1< core::Size > const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_working_native_pose(core::pose::PoseCOP pose)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_working_res_list(utility::vector1< core::Size > const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_working_sequence(std::string const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_working_superimpose_res(utility::vector1< core::Size > const &working_superimpose_res)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
set_working_terminal_res(utility::vector1< core::Size > const &working_terminal_res)	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
StepWiseProteinJobParameters()	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
sub_to_full()	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
sub_to_full_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
which_chain_has_moving_res() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
which_chain_has_moving_res_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
working_bridge_res() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
working_bridge_res_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
working_calc_rms_res() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
working_calc_rms_res_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
working_fixed_res() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
working_fixed_res_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
working_moving_res_list() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
working_moving_res_list_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
working_moving_suite_list() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
working_moving_suite_list_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
working_native_pose() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
working_native_pose_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
working_res_list() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
working_res_list_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
working_sequence() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
working_sequence_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
working_superimpose_res() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
working_superimpose_res_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
working_terminal_res() const	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters
working_terminal_res_	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	private
~StepWiseProteinJobParameters()	protocols::stepwise::sampling::protein::StepWiseProteinJobParameters	virtual