#include <AveragePathLengthFilter.hh>

Public Member Functions
	AveragePathLengthFilter ()

	AveragePathLengthFilter (core::Real path_tightness, core::Real max_path_length)

	AveragePathLengthFilter (AveragePathLengthFilter const &src)

virtual	~AveragePathLengthFilter ()

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

filters::FilterOP	clone () const

filters::FilterOP	fresh_instance () const

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &, moves::Movers_map const &, core::pose::Pose const &)

core::Real	max_path_length () const

void	max_path_length (core::Real value)

core::Real	path_tightness () const

void	path_tightness (core::Real value)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
core::Real	path_tightness_

core::Real	max_path_length_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::AveragePathLengthFilter::AveragePathLengthFilter ( )

References filters.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::AveragePathLengthFilter::AveragePathLengthFilter	(	core::Real	path_tightness,
		core::Real	max_path_length
	)

References filters.

protocols::simple_filters::AveragePathLengthFilter::AveragePathLengthFilter ( AveragePathLengthFilter const & src )

References filters.

protocols::simple_filters::AveragePathLengthFilter::~AveragePathLengthFilter ( )

virtual

Member Function Documentation

bool protocols::simple_filters::AveragePathLengthFilter::apply ( core::pose::Pose const & pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), core::conformation::Residue::is_bonded(), j, max_path_length_, path_tightness_, core::pose::Pose::residue(), core::pose::Pose::total_residue(), and protocols::simple_filters::TR.

filters::FilterOP protocols::simple_filters::AveragePathLengthFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References AveragePathLengthFilter().

core::Real protocols::simple_filters::AveragePathLengthFilter::compute ( core::pose::Pose const & pose ) const

References protocols::toolbox::ResidueNetwork::average_shortest_path_length(), and protocols::toolbox::ResidueNetwork::create_from_pose().

Referenced by apply(), report(), and report_sm().

filters::FilterOP protocols::simple_filters::AveragePathLengthFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References AveragePathLengthFilter().

core::Real protocols::simple_filters::AveragePathLengthFilter::max_path_length ( ) const

References max_path_length_.

Referenced by parse_my_tag().

void protocols::simple_filters::AveragePathLengthFilter::max_path_length ( core::Real value )

References max_path_length_.

void protocols::simple_filters::AveragePathLengthFilter::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	,
		filters::Filters_map const &	,
		moves::Movers_map const &	,
		core::pose::Pose const &
	)