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Rosetta Protocols
2014.16.56682
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#include <MoverContainer.hh>
Public Member Functions | |
| MoverContainer () | |
| MoverContainer (MoverContainer const &source) | |
| to be called by derived-class clone() methods; copy all data from the source MoverContainer More... | |
| void | add_mover (MoverOP mover_in, core::Real weight_in=1.0) |
| Adds a mover to the end of this container. More... | |
| std::string | get_mover (core::Size index) const |
| void | clear () |
| virtual void | set_input_pose (PoseCOP pose) |
| Sets the input Pose for both the container and the contained movers, for rmsd. More... | |
| virtual void | set_native_pose (PoseCOP pose) |
| setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More... | |
| virtual void | apply (core::pose::Pose &pose)=0 |
| Size | nr_moves () |
| Size | size () const |
| MoverOP | front () |
| utility::vector0< core::Real > const & | weights () const |
| utility::vector0< MoverOP > const & | movers () const |
Public Member Functions inherited from protocols::moves::Mover | |
| Mover () | |
| virtual | ~Mover () |
| virtual MoverSP | create () |
| virtual void | apply (core::io::serialization::PipeMap &pmap) |
| virtual void | parse_state (SerializableState const &state) |
| virtual void | parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) |
| virtual void | save_state (SerializableState &state) |
| Mover (std::string const &type_name) | |
| sets the type for a mover; name_ has been removed (2010/05/14) More... | |
| Mover (Mover const &other) | |
| Mover & | operator= (Mover const &other) |
| assignment operator More... | |
| virtual core::Real | last_proposal_density_ratio () |
| std::string const & | type () const |
| std::string | get_current_tag () const |
| A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More... | |
| void | set_current_tag (std::string const &new_tag) |
| PoseCOP | get_input_pose () const |
| PoseCOP | get_native_pose () const |
| virtual void | test_move (Pose &pose) |
| : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More... | |
| void | type (const std::string &type_in) |
| virtual MoverOP | clone () const |
| Return a clone of the Mover object. More... | |
| virtual void | parse_my_tag (TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) |
| Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More... | |
| virtual std::string | get_name () const =0 |
| Each derived class must specify its name. The class name. More... | |
| std::string | get_type () const |
| MoverStatus | get_last_move_status () const |
| end parser interface, start Job Distributor interface///////////// More... | |
| void | reset_status () |
| resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More... | |
| virtual core::pose::PoseOP | get_additional_output () |
| Mechanism by which a mover may return multiple output poses from a single input pose. More... | |
| virtual void | clear_info () |
| Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More... | |
| virtual Strings & | info () |
| non-const accessor More... | |
| virtual Strings const & | info () const |
| const accessor More... | |
| virtual bool | reinitialize_for_each_job () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More... | |
| virtual bool | reinitialize_for_new_input () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More... | |
| virtual MoverOP | fresh_instance () const |
| Generates a new Mover object freshly created with the default ctor. More... | |
| void | set_current_job (protocols::jobdist::BasicJobCOP job) |
| jobdist::BasicJobCOP | get_current_job () const |
| virtual void | show (std::ostream &output=std::cout) const |
| Outputs details about the Mover, including current settings. More... | |
Protected Attributes | |
| utility::vector0< core::Real > | weight_ |
| relative weight when part of MoverContainer. More... | |
| utility::vector0< MoverOP > | movers_ |
Friends | |
| std::ostream & | operator<< (std::ostream &os, MoverContainer const &mover) |
Additional Inherited Members | |
Public Types inherited from protocols::moves::Mover | |
| typedef utility::tag::TagCOP | TagCOP |
| typedef core::pose::Pose | Pose |
| typedef core::pose::PoseCOP | PoseCOP |
| typedef protocols::filters::Filters_map | Filters_map |
| typedef std::list< std::string > | Strings |
Static Public Member Functions inherited from protocols::moves::Mover | |
| static std::string | name () |
| static void | register_options () |
| Overload this static method if you access options within the mover. More... | |
Protected Member Functions inherited from protocols::moves::Mover | |
| void | set_last_move_status (MoverStatus status) |
| nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More... | |
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inline |
| protocols::moves::MoverContainer::MoverContainer | ( | MoverContainer const & | source | ) |
to be called by derived-class clone() methods; copy all data from the source MoverContainer
Invoke clone() on each of the movers that are contained by this MoverContainer to create deep copies.
| void protocols::moves::MoverContainer::add_mover | ( | MoverOP | mover_in, |
| core::Real | weight_in = 1.0 |
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| ) |
Adds a mover to the end of this container.
References movers_, and weight_.
Referenced by protocols::docking::DockingProtocol::add_additional_low_resolution_step(), protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer::add_inner_cycle_step(), protocols::canonical_sampling::CanonicalSamplingMover::add_mover(), protocols::topology_broker::FoldandDockClaimer::add_mover(), protocols::topology_broker::AsymFoldandDockClaimer::add_mover(), protocols::topology_broker::MembraneTopologyClaimer::add_mover(), protocols::topology_broker::FibrilModelingClaimer::add_mover(), protocols::topology_broker::TopologyClaimer::add_mover(), protocols::rbsegment_relax::AutoRBMover::apply(), protocols::metal_interface::ZincHeterodimerMover::apply(), protocols::antibody_legacy::AntibodyModeler::apply(), protocols::floppy_tail::FloppyTailMover::apply(), protocols::antibody::LHSnugFitLegacy::apply(), protocols::rbsegment_relax::RBSegmentRelax::apply(), protocols::ncbb::NcbbDockDesignProtocol::apply(), protocols::antibody_legacy::GraftMover::apply(), protocols::ncbb::oop::OopDockDesignProtocol::apply(), protocols::relax::ClassicRelax::apply(), protocols::ncbb::oop::OopCreatorMover::apply(), protocols::hybridization::FoldTreeHybridize::apply(), protocols::antibody_legacy::LoopRlxMover::apply(), protocols::ub_e2c::ubi_e2c_modeler::calc_interaction_energy(), protocols::ub_e2c::ubi_e2c_modeler::centroid_mode_perturbation(), protocols::antibody_legacy::CloseOneMover::close_one_loop_stem(), protocols::docking::DockingLowResEnsemble::finalize_setup(), protocols::antibody::CDRsMinPackMin::finalize_setup(), protocols::antibody::GraftCDRLoopsProtocol::finalize_setup(), protocols::docking::DockingLowRes::finalize_setup(), protocols::antibody::H3RefineCCD::finalize_setup(), protocols::ub_e2c::ubi_e2c_modeler::fullatom_mode_perturbation(), protocols::ub_e2c::ubi_e2c_modeler::initial_cter_perturbation(), protocols::antibody::RefineOneCDRLoopCentroid::loop_centroid_relax(), protocols::antibody_legacy::CDRH3Modeler::loop_centroid_relax(), protocols::antibody_legacy::CDRH3Modeler::loop_fa_relax(), protocols::pmut_scan::PointMutScanDriver::make_mutant_structure(), protocols::ub_e2c::ubi_e2c_modeler::monoub_calc_interaction_energy(), protocols::ub_e2c::ubi_e2c_modeler::monoub_fullatom_mode_perturbation(), protocols::ub_e2c::ubi_e2c_modeler::monoub_initial_cter_perturbation(), protocols::topology_broker::TopologyBroker::mover(), protocols::ub_e2c::ubi_e2c_modeler::optimize_cov_bond(), protocols::moves::RandomMover::parse_my_tag(), protocols::relax::Relax_main(), protocols::simple_moves::symmetry::SymShakeStructureMover::run_mc(), protocols::simple_moves::ShakeStructureMover::run_mc(), protocols::moves::SequenceMover::SequenceMover(), protocols::relax::ClassicRelax::set_default_moveset_phase2(), protocols::relax::ClassicRelax::set_default_moveset_phase3(), protocols::symmetric_docking::SymDockingLowRes::set_default_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_mcm_protocol(), protocols::docking::DockingHighResLegacy::set_dock_mcm_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_min_protocol(), protocols::docking::DockingHighResLegacy::set_dock_min_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_ppk_protocol(), protocols::docking::DockingHighResLegacy::set_dock_ppk_protocol(), protocols::surface_docking::CentroidRelaxMover::setup_movers(), protocols::surface_docking::FullatomRelaxMover::setup_movers(), protocols::docking::DockingProtocol::setup_objects(), protocols::docking::DockingEnsemblePrepackProtocol::setup_pack_operation_movers(), protocols::docking::DockingPrepackProtocol::setup_pack_operation_movers(), protocols::docking::DockMCMCycle::setup_protocol(), protocols::antibody_legacy::AntibodyModeler::snugfit_MC_min(), protocols::antibody::LHRepulsiveRampLegacy::snugfit_MC_min(), protocols::antibody_legacy::AntibodyModeler::snugfit_mcm_protocol(), protocols::symmetric_docking::SymDock_main(), protocols::flexpep_docking::FlexPepDockingLowRes::torsions_monte_carlo(), and protocols::flexpep_docking::FlexPepDockingAbInitio::torsions_monte_carlo().
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pure virtual |
Implements protocols::moves::Mover.
Implemented in protocols::moves::CycleMover, protocols::moves::RandomMover, and protocols::moves::SequenceMover.
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inline |
References movers_.
| std::string protocols::moves::MoverContainer::get_mover | ( | core::Size | index | ) | const |
References movers_.
Referenced by protocols::moves::operator<<().
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inline |
References movers_.
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virtual |
Sets the input Pose for both the container and the contained movers, for rmsd.
Reimplemented from protocols::moves::Mover.
References movers_, and protocols::moves::Mover::set_input_pose().
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virtual |
setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe
Reimplemented from protocols::moves::Mover.
References movers_, and protocols::moves::Mover::set_native_pose().
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inline |
References movers_.
Referenced by protocols::topology_broker::TopologyBroker::mover(), and protocols::moves::operator<<().
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inline |
References weight_.
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friend |
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protected |
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protected |
relative weight when part of MoverContainer.
Referenced by add_mover(), protocols::moves::RandomMover::apply(), MoverContainer(), and weights().
1.8.7