protocols::fldsgn::filters::InterlockingAromaFilter Class Reference

#include <InterlockingAromaFilter.hh>

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef std::string	String
typedef protocols::fldsgn::topology::SS_Info2_COP	SS_Info2_COP
typedef utility::tag::TagCOP	TagCOP
typedef protocols::filters::Filters_map	Filters_map
typedef basic::datacache::DataMap	DataMap
typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	InterlockingAromaFilter ()
	InterlockingAromaFilter (String const &type)
	InterlockingAromaFilter (InterlockingAromaFilter const &rval)
virtual	~InterlockingAromaFilter ()
virtual FilterOP	clone () const
virtual FilterOP	fresh_instance () const
void	filter_value (Real const value)
void	contact_distance (Real const value)
void	verbose (bool const b)
virtual std::string	name () const
virtual void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &, Filters_map const &, Movers_map const &, Pose const &pose)
	parse xml More...
virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
virtual Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual void	report (std::ostream &out, Pose const &pose) const
	used to report score More...
Real	compute (Pose const &pose) const
	compute this filter More...
bool	compute (Size const &res, Pose const &pose, SS_Info2_COP const ssinfo) const
	compute this filter for a give residue More...
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
Real	filter_value_
Real	contact_dist2_
String	input_ss_
bool	verbose_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::fldsgn::filters::InterlockingAromaFilter::DataMap

typedef protocols::filters::Filter protocols::fldsgn::filters::InterlockingAromaFilter::Filter

typedef protocols::filters::FilterOP protocols::fldsgn::filters::InterlockingAromaFilter::FilterOP

typedef protocols::filters::Filters_map protocols::fldsgn::filters::InterlockingAromaFilter::Filters_map

typedef protocols::moves::Movers_map protocols::fldsgn::filters::InterlockingAromaFilter::Movers_map

typedef core::pose::Pose protocols::fldsgn::filters::InterlockingAromaFilter::Pose

typedef core::Real protocols::fldsgn::filters::InterlockingAromaFilter::Real

typedef protocols::fldsgn::topology::SS_Info2_COP protocols::fldsgn::filters::InterlockingAromaFilter::SS_Info2_COP

typedef std::string protocols::fldsgn::filters::InterlockingAromaFilter::String

typedef protocols::filters::Filter protocols::fldsgn::filters::InterlockingAromaFilter::Super

typedef utility::tag::TagCOP protocols::fldsgn::filters::InterlockingAromaFilter::TagCOP

Constructor & Destructor Documentation

protocols::fldsgn::filters::InterlockingAromaFilter::InterlockingAromaFilter

(

)

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::InterlockingAromaFilter::InterlockingAromaFilter

(

String const &

type

)

protocols::fldsgn::filters::InterlockingAromaFilter::InterlockingAromaFilter

(

InterlockingAromaFilter const &

rval

)

virtual protocols::fldsgn::filters::InterlockingAromaFilter::~InterlockingAromaFilter ( )

inlinevirtual

Member Function Documentation

bool protocols::fldsgn::filters::InterlockingAromaFilter::apply ( Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), filter_value_, and tr.

virtual FilterOP protocols::fldsgn::filters::InterlockingAromaFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References InterlockingAromaFilter().

InterlockingAromaFilter::Real protocols::fldsgn::filters::InterlockingAromaFilter::compute

(

Pose const &

pose

)

const

compute this filter

References core::pose::Pose::aa(), core::chemical::aa_phe, core::chemical::aa_trp, core::chemical::aa_tyr, dssp, input_ss_, runtime_assert, ss, and core::pose::Pose::total_residue().

Referenced by apply(), report(), and report_sm().

bool protocols::fldsgn::filters::InterlockingAromaFilter::compute	(	Size const &	res,
		Pose const &	pose,
		SS_Info2_COP const	ssinfo
	)		const

compute this filter for a give residue

References core::pose::Pose::aa(), core::chemical::aa_phe, core::chemical::aa_trp, core::chemical::aa_tyr, centroid, core::graph::Node::const_edge_list_end(), contact_dist2_, core::pose::Pose::energies(), core::graph::Edge::get_node(), core::pose::Pose::residue(), residue, runtime_assert, core::scoring::Energies::tenA_neighbor_graph(), tr, and numeric::xyzVector< class >::zero().

void protocols::fldsgn::filters::InterlockingAromaFilter::contact_distance

(

Real const

value

)

References contact_dist2_, and numeric::square().

Referenced by parse_my_tag().

void protocols::fldsgn::filters::InterlockingAromaFilter::filter_value

(

Real const

value

)

References filter_value_.

Referenced by parse_my_tag().

virtual FilterOP protocols::fldsgn::filters::InterlockingAromaFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References InterlockingAromaFilter().

virtual std::string protocols::fldsgn::filters::InterlockingAromaFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::fldsgn::filters::InterlockingAromaFilter::parse_my_tag ( TagCOP  tag, basic::datacache::DataMap &  , Filters_map const &  , Movers_map const &  , Pose const &  pose  )

virtual

parse xml

Reimplemented from protocols::filters::Filter.

References blueprint, contact_distance(), filter_value(), input_ss_, protocols::jd2::parser::BluePrint::secstruct(), and verbose_.

void protocols::fldsgn::filters::InterlockingAromaFilter::report ( std::ostream &  out, Pose const &  pose  ) const

virtual

used to report score

Reimplemented from protocols::filters::Filter.

References compute().

InterlockingAromaFilter::Real protocols::fldsgn::filters::InterlockingAromaFilter::report_sm ( Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::fldsgn::filters::InterlockingAromaFilter::verbose

(

bool const

b

)

References protocols::match::upstream::b, and verbose_.

Member Data Documentation

Real protocols::fldsgn::filters::InterlockingAromaFilter::contact_dist2_

private

Referenced by compute(), and contact_distance().

Real protocols::fldsgn::filters::InterlockingAromaFilter::filter_value_

private

Referenced by apply(), and filter_value().

String protocols::fldsgn::filters::InterlockingAromaFilter::input_ss_

private

Referenced by compute(), and parse_my_tag().

bool protocols::fldsgn::filters::InterlockingAromaFilter::verbose_

private

Referenced by parse_my_tag(), and verbose().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/fldsgn/filters/InterlockingAromaFilter.hh
• symlinks/rosetta/src/protocols/fldsgn/filters/InterlockingAromaFilter.cc