FloatingBaseUtil.cc File Reference

#include <protocols/rotamer_sampler/rigid_body/FloatingBaseUtil.hh>
#include <core/chemical/rna/RNA_Util.hh>
#include <core/scoring/rna/RNA_CentroidInfo.hh>
#include <core/id/AtomID.hh>
#include <core/kinematics/Stub.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <utility/tools/make_vector1.hh>
#include <basic/Tracer.hh>
#include <numeric/xyz.functions.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::rotamer_sampler
	protocols::rotamer_sampler::rigid_body

Functions
void	protocols::rotamer_sampler::rigid_body::get_atom_coordinates (utility::vector1< std::pair< id::AtomID, numeric::xyzVector< Real > > > &xyz_list, Size const &seq_num, conformation::Residue const &rsd_at_origin, kinematics::Stub const &moving_res_base_stub)
void	protocols::rotamer_sampler::rigid_body::get_specific_atom_coordinate (Size const atom_index, Vector &atom_pos, conformation::Residue const &rsd_at_origin, kinematics::Stub const &moving_res_base_stub)
void	protocols::rotamer_sampler::rigid_body::get_specific_atom_coordinate (Vector &atom_pos, kinematics::Stub const &moving_res_base_stub)
void	protocols::rotamer_sampler::rigid_body::get_specific_atom_coordinate (std::string const &atom_name, Vector &atom_pos, conformation::Residue const &rsd_at_origin, kinematics::Stub const &moving_res_base_stub)
Size	protocols::rotamer_sampler::rigid_body::figure_out_reference_res_for_jump (pose::Pose const &pose, Size const moving_res)
utility::vector1< Size >	protocols::rotamer_sampler::rigid_body::figure_out_moving_partition_res (pose::Pose const &pose, Size const moving_res, Size const reference_res)
void	protocols::rotamer_sampler::rigid_body::set_to_origin (pose::Pose &pose, Size const seq_num, utility::vector1< Size > const &move_res_list, bool verbose=false)
void	protocols::rotamer_sampler::rigid_body::set_to_origin (pose::Pose &pose, Size const seq_num, bool verbose)
kinematics::Stub	protocols::rotamer_sampler::rigid_body::initialize_stub (conformation::Residue const &rsd)
PoseCOP	protocols::rotamer_sampler::rigid_body::transform_moving_partition_to_origin (pose::Pose const &pose_start, Size const moving_res, utility::vector1< Size > const &moving_partition_res)

Variables
static basic::Tracer	TR ("protocols.rotamer_sampler.rigid_body.FloatingBaseUtil")

Detailed Description

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Variable Documentation

basic::Tracer TR("protocols.rotamer_sampler.rigid_body.FloatingBaseUtil")

static