| add_constraints_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| after_placement_filter_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| allowed_aas_ | protocols::simple_moves::DesignRepackMover | protected |
| apply(core::pose::Pose &pose) | protocols::protein_interface_design::movers::PlaceStubMover | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| automatic_repacking_definition_ | protocols::simple_moves::DesignRepackMover | protected |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clear_task() | protocols::simple_moves::DesignRepackMover | |
| clear_task_factory() | protocols::simple_moves::DesignRepackMover | |
| clone() const | protocols::protein_interface_design::movers::PlaceStubMover | virtual |
| coord_cst_func_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| coord_cst_std_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| create() | protocols::moves::Mover | virtual |
| cst_cleanup(core::pose::Pose &pose) | protocols::protein_interface_design::movers::PlaceStubMover | private |
| curr_coordinate_constraints_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| curr_min_bb_ | protocols::simple_moves::DesignRepackMover | protected |
| curr_min_rb_ | protocols::simple_moves::DesignRepackMover | protected |
| curr_min_sc_ | protocols::simple_moves::DesignRepackMover | protected |
| default_fold_tree_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| design(bool const des) | protocols::simple_moves::DesignRepackMover | inline |
| design() const | protocols::simple_moves::DesignRepackMover | inline |
| design_movers_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| design_partner1_ | protocols::simple_moves::DesignRepackMover | protected |
| design_partner2_ | protocols::simple_moves::DesignRepackMover | protected |
| DesignMoverFoldTreePair typedef | protocols::protein_interface_design::movers::PlaceStubMover | |
| DesignMoverRealPair typedef | protocols::protein_interface_design::movers::PlaceStubMover | |
| DesignRepackMover() | protocols::simple_moves::DesignRepackMover | |
| DesignRepackMover(std::string const name) | protocols::simple_moves::DesignRepackMover | |
| disallowed_host_pos_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| Filters_map typedef | protocols::moves::Mover | |
| final_cleanup(core::pose::Pose &pose) | protocols::protein_interface_design::movers::PlaceStubMover | private |
| final_filter_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| fresh_instance() const | protocols::protein_interface_design::movers::PlaceStubMover | inlinevirtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::protein_interface_design::movers::PlaceStubMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| host_chain_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| hurry_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| interface_distance_cutoff_ | protocols::simple_moves::DesignRepackMover | protected |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| leave_coord_csts_after_placement_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| max_cb_cb_dist_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| min_bb(utility::vector1< bool > const &min_bb) | protocols::simple_moves::DesignRepackMover | inline |
| min_bb() const | protocols::simple_moves::DesignRepackMover | inline |
| min_bb_ | protocols::simple_moves::DesignRepackMover | protected |
| min_bb_set() const | protocols::simple_moves::DesignRepackMover | inline |
| min_bb_set_ | protocols::simple_moves::DesignRepackMover | protected |
| min_rb(utility::vector1< bool > const min_rb) | protocols::simple_moves::DesignRepackMover | inline |
| min_rb(bool const min_rb) | protocols::simple_moves::DesignRepackMover | inline |
| min_rb() const | protocols::simple_moves::DesignRepackMover | inline |
| min_rb_ | protocols::simple_moves::DesignRepackMover | protected |
| min_rb_set() const | protocols::simple_moves::DesignRepackMover | inline |
| min_rb_set_ | protocols::simple_moves::DesignRepackMover | protected |
| min_sc(utility::vector1< bool > const &min_sc) | protocols::simple_moves::DesignRepackMover | inline |
| min_sc() const | protocols::simple_moves::DesignRepackMover | inline |
| min_sc_ | protocols::simple_moves::DesignRepackMover | protected |
| min_sc_set() const | protocols::simple_moves::DesignRepackMover | inline |
| min_sc_set_ | protocols::simple_moves::DesignRepackMover | protected |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(Mover const &other) | protocols::moves::Mover | |
| optimize_foldtree() const | protocols::simple_moves::DesignRepackMover | inline |
| optimize_foldtree(bool const opt) | protocols::simple_moves::DesignRepackMover | inline |
| optimize_foldtree_ | protocols::simple_moves::DesignRepackMover | protected |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) | protocols::protein_interface_design::movers::PlaceStubMover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| place_scaffold_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| place_stub(core::pose::Pose &pose, core::conformation::Residue const res_stub, core::Size const res_num) | protocols::protein_interface_design::movers::PlaceStubMover | private |
| placed_stubs_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| PlaceStubMover() | protocols::protein_interface_design::movers::PlaceStubMover | |
| PlaceStubMover(protocols::hotspot_hashing::HotspotStubSetOP stub_set, core::Real score_threshold, core::Size const host_chain, protocols::filters::FilterOP final_filter, bool const hurry=false, bool const triage_positions=true, core::Real stub_energy_threshold=1.0) | protocols::protein_interface_design::movers::PlaceStubMover | |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| post_placement_sdev_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| prevent_repacking(utility::vector1< core::Size > const p) | protocols::simple_moves::DesignRepackMover | inline |
| prevent_repacking() const | protocols::simple_moves::DesignRepackMover | inline |
| prevent_repacking_ | protocols::simple_moves::DesignRepackMover | protected |
| previous_coordinate_constraints_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| refresh_coordinate_constraints(core::pose::Pose &pose, core::Real const sdev) | protocols::protein_interface_design::movers::PlaceStubMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| repack_non_ala_ | protocols::simple_moves::DesignRepackMover | protected |
| repack_partner1_ | protocols::simple_moves::DesignRepackMover | protected |
| repack_partner2_ | protocols::simple_moves::DesignRepackMover | protected |
| reset_status() | protocols::moves::Mover | |
| residue_level_tasks_for_placed_hotspots_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| residue_numbers_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| restrict_to_repacking(utility::vector1< core::Size > const p) | protocols::simple_moves::DesignRepackMover | inline |
| restrict_to_repacking() const | protocols::simple_moves::DesignRepackMover | inline |
| restrict_to_repacking_ | protocols::simple_moves::DesignRepackMover | protected |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| saved_bb_constraints_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| saved_placed_stubs_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| saved_prevent_repacking_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| score_threshold_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| scorefxn_minimize() const | protocols::simple_moves::DesignRepackMover | |
| scorefxn_minimize_ | protocols::simple_moves::DesignRepackMover | protected |
| scorefxn_repack() const | protocols::simple_moves::DesignRepackMover | |
| scorefxn_repack_ | protocols::simple_moves::DesignRepackMover | protected |
| SelectStubIteratively(protocols::hotspot_hashing::HotspotStubSet::Hs_vec::const_iterator stub_it) | protocols::protein_interface_design::movers::PlaceStubMover | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_scorefxn_minimize(core::scoring::ScoreFunctionCOP scorefxn) | protocols::simple_moves::DesignRepackMover | |
| set_scorefxn_repack(core::scoring::ScoreFunctionCOP scorefxn) | protocols::simple_moves::DesignRepackMover | |
| setup_packer_and_movemap(core::pose::Pose const &pose) | protocols::simple_moves::DesignRepackMover | |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| stub_based_atom_tree(core::pose::Pose &pose, core::conformation::Residue const res_stub, core::Real const cst_sdev) | protocols::protein_interface_design::movers::PlaceStubMover | private |
| stub_energy_threshold_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| stub_minimize_movers(utility::vector1< DesignMoverRealPair > const &dmrp) | protocols::protein_interface_design::movers::PlaceStubMover | inline |
| stub_minimize_movers() const | protocols::protein_interface_design::movers::PlaceStubMover | inline |
| stub_minimize_movers_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| stub_set_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| StubMinimize(core::pose::Pose &pose, protocols::hotspot_hashing::HotspotStubCOP=NULL, core::Size const host_res=0, bool const hurry=false) | protocols::protein_interface_design::movers::PlaceStubMover | private |
| symmetry_ | protocols::simple_moves::DesignRepackMover | protected |
| TagCOP typedef | protocols::moves::Mover | |
| target_residues_ | protocols::simple_moves::DesignRepackMover | protected |
| task() const | protocols::simple_moves::DesignRepackMover | |
| task() | protocols::simple_moves::DesignRepackMover | |
| task_ | protocols::simple_moves::DesignRepackMover | protected |
| task_factory(core::pack::task::TaskFactoryOP p) | protocols::simple_moves::DesignRepackMover | |
| task_factory() | protocols::simple_moves::DesignRepackMover | |
| task_factory() const | protocols::simple_moves::DesignRepackMover | |
| task_factory_ | protocols::simple_moves::DesignRepackMover | protected |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| triage_positions_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| use_preset_task(bool const bt) | protocols::simple_moves::DesignRepackMover | inline |
| use_preset_task() const | protocols::simple_moves::DesignRepackMover | inline |
| use_preset_task_ | protocols::simple_moves::DesignRepackMover | protected |
| user_defined_name_ | protocols::protein_interface_design::movers::PlaceStubMover | private |
| ~DesignRepackMover() | protocols::simple_moves::DesignRepackMover | virtual |
| ~Mover() | protocols::moves::Mover | virtual |
| ~PlaceStubMover() | protocols::protein_interface_design::movers::PlaceStubMover | virtual |
1.8.7