#include <motif_hash_stuff.hh>

Public Types
typedef uint64_t	Key

typedef double	Count

typedef numeric::geometry::hashing::SixDCoordinateBinner	SixDCoordinateBinner

typedef numeric::geometry::hashing::bin_index_hasher	bin_index_hasher

typedef boost::unordered_map < Key, Count, bin_index_hasher >	CountMap

Public Member Functions
	XformScore ()

void	add_xform_count (Real6 const &xform)

void	set_score (Key const &, Count const &count)

void	add_score (Key const &, Count const &count)

Count	score_of_bin (Real6 const &xform) const

Count	score_of_bin (Key const &key) const

Real	score_of_bin_normalized (Real6 const &xform) const

bool	write_binary (std::ostream &out) const

bool	write_binary (std::string const &fname) const

bool	read_binary (std::istream &in, bool clearme=true)

bool	read_binary (std::string const &fname, bool clearme=true)

bool	read_binary (utility::vector1< std::string > const &fnames)

Size	num_bins () const

Size	num_samples () const

void	print_scores (std::ostream &out, std::string const tag="XH ") const

void	print_scores_norm (std::ostream &out, std::string const tag="XH ") const

void	clear ()

Real	cart_size () const

Key	bin_index (Real6 const &rt) const

void	print_quantiles (std::ostream &out, int num) const

Public Attributes
SixDCoordinateBinner	hasher_

CountMap	total_count_

double	cart_size_

double	cart_resl_

double	angle_resl_

Size	num_samples_

Friends
std::ostream &	operator<< (std::ostream &out, XformScore const &x)

Member Typedef Documentation

typedef numeric::geometry::hashing::bin_index_hasher protocols::motif_hash::XformScore::bin_index_hasher

typedef double protocols::motif_hash::XformScore::Count

typedef boost::unordered_map< Key, Count, bin_index_hasher > protocols::motif_hash::XformScore::CountMap

typedef uint64_t protocols::motif_hash::XformScore::Key

typedef numeric:: geometry::hashing::SixDCoordinateBinner protocols::motif_hash::XformScore::SixDCoordinateBinner

Constructor & Destructor Documentation

protocols::motif_hash::XformScore::XformScore ( )

References angle_resl_, cart_resl_, cart_size_, hash_angle_resl, mh::hash_angle_resl, mh::hash_cart_resl, hash_cart_resl, mh::hash_cart_size, hash_cart_size, mh, num_samples_, option, and options.

Referenced by protocols::motif_hash::get_xform_score_from_file().

Member Function Documentation

void protocols::motif_hash::XformScore::add_score	(	Key const &	key,
		Count const &	count
	)

References score_of_bin(), and total_count_.

Referenced by read_binary().

void protocols::motif_hash::XformScore::add_xform_count ( Real6 const & xform )

References bin_index(), key, num_samples_, and total_count_.

Referenced by protocols::motif_hash::harvest_scores().

XformScore::Key protocols::motif_hash::XformScore::bin_index ( Real6 const & rt ) const

References numeric::geometry::hashing::SixDCoordinateBinner::bin_index(), and hasher_.

Referenced by add_xform_count(), score_of_bin(), and score_of_bin_normalized().

Real protocols::motif_hash::XformScore::cart_size ( ) const

inline

References cart_size_.

Referenced by protocols::motif_hash::MotifHash::get_matching_motifs(), read_binary(), and write_binary().

void protocols::motif_hash::XformScore::clear ( )

References num_samples_, and total_count_.

Referenced by protocols::motif_hash::MotifHits::filter_redundant(), and read_binary().

Size protocols::motif_hash::XformScore::num_bins ( ) const

References total_count_.

Referenced by protocols::motif_hash::operator<<(), and write_binary().

Size protocols::motif_hash::XformScore::num_samples ( ) const

References num_samples_.

Referenced by protocols::motif_hash::operator<<(), and write_binary().

void protocols::motif_hash::XformScore::print_quantiles	(	std::ostream &	out,
		int	num
	)		const

References protocols::forge::build::SegmentInsertConnectionScheme::N, and total_count_.

Referenced by protocols::motif_hash::operator<<().

void protocols::motif_hash::XformScore::print_scores	(	std::ostream &	out,
		std::string const	tag = `"XH "`
	)		const

References key, and total_count_.

void protocols::motif_hash::XformScore::print_scores_norm	(	std::ostream &	out,
		std::string const	tag = `"XH "`
	)		const

References numeric::geometry::hashing::SixDCoordinateBinner::bin_center_point(), numeric::geometry::hashing::SixDCoordinateBinner::bin_from_index(), center(), hasher_, key, radians(), and total_count_.

bool protocols::motif_hash::XformScore::read_binary	(	std::istream &	in,
		bool	clearme = `true`
	)

References add_score(), angle_resl_, cart_resl_, cart_size(), cart_size_, clear(), cout, key, and utility_exit_with_message.

Referenced by protocols::motif_hash::get_xform_score_from_file(), protocols::motif_hash::print_scores(), and read_binary().

bool protocols::motif_hash::XformScore::read_binary	(	std::string const &	fname,
		bool	clearme = `true`
	)

References utility::io::izstream::close(), utility::io::izstream::good(), in, and read_binary().

bool protocols::motif_hash::XformScore::read_binary ( utility::vector1< std::string > const & fnames )

XformScore::Count protocols::motif_hash::XformScore::score_of_bin ( Real6 const & xform ) const

References bin_index(), key, and total_count_.

Referenced by add_score(), and score_of_bin_normalized().

XformScore::Count protocols::motif_hash::XformScore::score_of_bin ( Key const & key ) const

References total_count_.

Real protocols::motif_hash::XformScore::score_of_bin_normalized ( Real6 const & xform ) const

References numeric::geometry::hashing::SixDCoordinateBinner::bin_center_point(), numeric::geometry::hashing::SixDCoordinateBinner::bin_from_index(), bin_index(), center(), hasher_, key, radians(), and score_of_bin().

void protocols::motif_hash::XformScore::set_score	(	Key const &	key,
		Count const &	count
	)

References total_count_.

bool protocols::motif_hash::XformScore::write_binary ( std::ostream & out ) const

References angle_resl_, cart_resl_, cart_size(), cart_size_, basic::options::OptionKeys::mh::harvest_scores_min_count, key, num_bins(), num_samples(), option, and total_count_.

Referenced by write_binary().

bool protocols::motif_hash::XformScore::write_binary ( std::string const & fname ) const

References utility::io::ozstream::close(), utility::io::ozstream::good(), and write_binary().

Friends And Related Function Documentation

std::ostream& operator<<	(	std::ostream &	out,
		XformScore const &	x
	)

friend

Member Data Documentation

double protocols::motif_hash::XformScore::angle_resl_

Referenced by protocols::motif_hash::operator<<(), read_binary(), write_binary(), and XformScore().

double protocols::motif_hash::XformScore::cart_resl_

Referenced by protocols::motif_hash::operator<<(), read_binary(), write_binary(), and XformScore().

double protocols::motif_hash::XformScore::cart_size_

Referenced by cart_size(), protocols::motif_hash::operator<<(), read_binary(), write_binary(), and XformScore().

SixDCoordinateBinner protocols::motif_hash::XformScore::hasher_

Referenced by bin_index(), print_scores_norm(), and score_of_bin_normalized().

Size protocols::motif_hash::XformScore::num_samples_

Referenced by add_xform_count(), clear(), num_samples(), and XformScore().

CountMap protocols::motif_hash::XformScore::total_count_

Referenced by add_score(), add_xform_count(), clear(), num_bins(), print_quantiles(), print_scores(), print_scores_norm(), score_of_bin(), set_score(), and write_binary().

The documentation for this class was generated from the following files:

symlinks/rosetta/src/protocols/motif_hash/motif_hash_stuff.hh
symlinks/rosetta/src/protocols/motif_hash/motif_hash_stuff.cc

Public Types

Public Member Functions

Public Attributes

Friends

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation