RNA_DeNovoProtocol.cc File Reference

#include <protocols/farna/RNA_DeNovoProtocol.hh>
#include <protocols/toolbox/AllowInsert.hh>
#include <protocols/farna/RNA_BasePairClassifier.hh>
#include <protocols/farna/RNA_DataReader.hh>
#include <protocols/farna/RNA_DataReader.fwd.hh>
#include <protocols/farna/FullAtomRNA_Fragments.hh>
#include <protocols/farna/RNA_LoopCloser.hh>
#include <protocols/farna/RNA_LoopCloser.fwd.hh>
#include <protocols/farna/RNA_Minimizer.fwd.hh>
#include <protocols/farna/RNA_Minimizer.hh>
#include <protocols/farna/RNA_Relaxer.fwd.hh>
#include <protocols/farna/RNA_Relaxer.hh>
#include <protocols/farna/RNA_StructureParameters.hh>
#include <protocols/farna/RNA_ChunkLibrary.hh>
#include <protocols/farna/RNA_ChunkLibrary.fwd.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/stepwise/StepWiseUtil.hh>
#include <protocols/stepwise/sampling/rna/StepWiseRNA_Util.hh>
#include <protocols/farna/RNA_ProtocolUtil.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MonteCarlo.fwd.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rna/RNA_LowResolutionPotential.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreType.hh>
#include <core/chemical/rna/RNA_Util.hh>
#include <core/scoring/rna/chemical_shift/RNA_ChemicalShiftPotential.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID.hh>
#include <core/id/DOF_ID.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <basic/database/open.hh>
#include <core/io/silent/RNA_SilentStruct.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/util.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/kinematics/ShortestPathInFoldTree.hh>
#include <core/scoring/rna/RNA_BaseDoubletClasses.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyMap.hh>
#include <utility/file/file_sys_util.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <numeric/random/random.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <list>
#include <sstream>
#include <fstream>
#include <protocols/viewer/GraphicsState.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>

Namespaces
	ObjexxFCL
	Application level code for relax-type protocols.
	ObjexxFCL::format
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::farna

Functions
bool	protocols::farna::check_in_base_pair_list (scoring::rna::Base_pair const &base_pair, utility::vector1< core::scoring::rna::Base_pair > const &base_pair_list)
std::ostream &	protocols::farna::operator<< (std::ostream &os, RNA_DeNovoProtocol const &mover)

Variables
static numeric::random::RandomGenerator	protocols::farna::RG (12320)
static basic::Tracer	protocols::farna::TR ("protocols.rna.RNA_DeNovoProtocol")