protocols::flexpack::rotamer_set::FlexbbRotamerSet Member List

This is the complete list of members for protocols::flexpack::rotamer_set::FlexbbRotamerSet, including all inherited members.

add_rotamer(conformation::Residue const &rotamer)	core::pack::rotamer_set::RotamerSet_	virtual
begin() const	core::pack::rotamer_set::RotamerSet_	virtual
build_dependent_rotamers(core::pack::rotamer_set::RotamerSets const &rotamer_sets, core::pose::Pose const &pose, core::scoring::ScoreFunction const &scorefxn, core::pack::task::PackerTask const &task, core::graph::GraphCOP packer_neighbor_graph)	protocols::flexpack::rotamer_set::FlexbbRotamerSet	virtual
build_dependent_rotamers_for_concrete(RotamerSets const &rotamer_sets, pose::Pose const &pose, scoring::ScoreFunction const &, task::PackerTask const &task, conformation::Residue const &existing_residue, chemical::ResidueTypeCOP concrete_residue, graph::GraphCOP packer_neighbor_graph)	core::pack::rotamer_set::RotamerSet_	protected
build_optimize_H_rotamers(pose::Pose const &pose, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, graph::GraphCOP packer_neighbor_graph)	core::pack::rotamer_set::RotamerSet_	protected
build_rotamers(pose::Pose const &the_pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, graph::GraphCOP packer_neighbor_graph, bool use_neighbor_context=true)	core::pack::rotamer_set::RotamerSet_	virtual
build_rotamers_for_concrete(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, graph::GraphCOP packer_neighbor_graph, bool use_neighbor_context=true)	core::pack::rotamer_set::RotamerSet_	protected
build_rotamers_for_concrete_virt(core::pose::Pose const &pose, core::scoring::ScoreFunction const &scorefxn, core::pack::task::PackerTask const &task, core::chemical::ResidueTypeCOP concrete_residue, core::graph::GraphCOP packer_neighbor_graph, bool use_neighbor_context=true)	protocols::flexpack::rotamer_set::FlexbbRotamerSet	protectedvirtual
bump_check(core::conformation::ResidueCOP rotamer, core::scoring::ScoreFunction const &sf, core::pose::Pose const &pose, core::pack::task::PackerTask const &task, core::graph::GraphCOP packer_neighbor_graph) const	protocols::flexpack::rotamer_set::FlexbbRotamerSet	protectedvirtual
ChiSetOP typedef	core::pack::rotamer_set::RotamerSet_
compute_one_body_energies(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, graph::GraphCOP packer_neighbor_graph, utility::vector1< core::PackerEnergy > &energies) const	core::pack::rotamer_set::RotamerSet_	virtual
compute_one_body_energy_maps(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, graph::GraphCOP packer_neighbor_graph, utility::vector1< scoring::EnergyMap > &energies) const	core::pack::rotamer_set::RotamerSet_	virtual
drop_rotamer(Size rot_id)	core::pack::rotamer_set::RotamerSet_	virtual
drop_rotamers(utility::vector1< bool > const &rotamers_to_delete)	core::pack::rotamer_set::RotamerSet_	virtual
drop_rotamers_by_index(utility::vector1< Size > const &rotamer_indices_to_delete)	core::pack::rotamer_set::RotamerSet_	virtual
end() const	core::pack::rotamer_set::RotamerSet_	virtual
existing_residue_	protocols::flexpack::rotamer_set::FlexbbRotamerSet	private
FlexbbRotamerSet()	protocols::flexpack::rotamer_set::FlexbbRotamerSet
get_n_residue_groups() const	core::pack::rotamer_set::RotamerSet_	virtual
get_n_residue_types() const	core::pack::rotamer_set::RotamerSet_	virtual
get_n_rotamers_for_residue_group(Size which_resgroup) const	core::pack::rotamer_set::RotamerSet_	virtual
get_n_rotamers_for_residue_type(Size which_resgroup) const	core::pack::rotamer_set::RotamerSet_	virtual
get_residue_group_begin(Size which_resgroup) const	core::pack::rotamer_set::RotamerSet_	virtual
get_residue_group_index_for_rotamer(Size which_rotamer) const	core::pack::rotamer_set::RotamerSet_	virtual
get_residue_type_begin(Size which_restype) const	core::pack::rotamer_set::RotamerSet_	virtual
get_residue_type_index_for_rotamer(Size which_rotamer) const	core::pack::rotamer_set::RotamerSet_	virtual
get_trie(Size method_enum_id) const	core::pack::rotamer_set::RotamerSet_	virtual
id_for_current_rotamer() const	core::pack::rotamer_set::RotamerSet_	virtual
nonconst_rotamer(Size rot_id)	core::pack::rotamer_set::RotamerSet_	virtual
num_rotamers() const	core::pack::rotamer_set::RotamerSet_	virtual
owner_	protocols::flexpack::rotamer_set::FlexbbRotamerSet	private
parent typedef	protocols::flexpack::rotamer_set::FlexbbRotamerSet
ResidueCOP typedef	core::pack::rotamer_set::RotamerSet_
ResidueOP typedef	core::pack::rotamer_set::RotamerSet_
rotamer(Size rot_id) const	core::pack::rotamer_set::RotamerSet_	virtual
RotamerSet_()	core::pack::rotamer_set::RotamerSet_
RotamerTrieBaseOP typedef	core::pack::rotamer_set::RotamerSet_
set_existing_residue(core::conformation::ResidueCOP residue)	protocols::flexpack::rotamer_set::FlexbbRotamerSet
set_extra_samples(task::PackerTask const &task, int num_10A_neighbors, int chi, chemical::ResidueTypeCOP concrete_residue, utility::vector1< Real > &extra_chi_steps) const	core::pack::rotamer_set::RotamerSet_
set_owner(FlexbbRotamerSetsCAP owner)	protocols::flexpack::rotamer_set::FlexbbRotamerSet
store_trie(Size method_enum_id, conformation::AbstractRotamerTrieOP trie)	core::pack::rotamer_set::RotamerSet_	virtual
~FlexbbRotamerSet()	protocols::flexpack::rotamer_set::FlexbbRotamerSet	virtual
~RotamerSet_()	core::pack::rotamer_set::RotamerSet_	virtual