| add_cst_files(std::string const cstfile) | protocols::relax::RelaxProtocolBase | inlineprotected |
| apply(Pose &pose) | protocols::relax::CentroidRelax | virtual |
| protocols::relax::RelaxProtocolBase::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| apply_disulfides(core::pose::Pose &pose) | protocols::relax::RelaxProtocolBase | |
| cartesian() const | protocols::relax::RelaxProtocolBase | inline |
| cartesian(bool newval) | protocols::relax::RelaxProtocolBase | inline |
| cartesian_mode_ | protocols::relax::CentroidRelax | private |
| cen_scorefxn_ | protocols::relax::CentroidRelax | private |
| CentroidRelax() | protocols::relax::CentroidRelax | |
| CentroidRelax(MoveMapOP mm) | protocols::relax::CentroidRelax | |
| CentroidRelax(MoveMapOP mm, ScoreFunctionOP cen_scorefxn_in) | protocols::relax::CentroidRelax | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::relax::CentroidRelax | virtual |
| constrain_coords() const | protocols::relax::RelaxProtocolBase | inline |
| constrain_coords(bool constrain_coords) | protocols::relax::RelaxProtocolBase | inline |
| constrain_relax_segments() const | protocols::relax::RelaxProtocolBase | inline |
| constrain_relax_segments(bool constrain_relax_segments) | protocols::relax::RelaxProtocolBase | inline |
| constrain_relax_to_native_coords() const | protocols::relax::RelaxProtocolBase | inline |
| constrain_relax_to_native_coords(bool constrain_relax_to_native_coords) | protocols::relax::RelaxProtocolBase | inline |
| constrain_relax_to_start_coords() const | protocols::relax::RelaxProtocolBase | inline |
| constrain_relax_to_start_coords(bool constrain_relax_to_start_coords) | protocols::relax::RelaxProtocolBase | inline |
| create() | protocols::moves::Mover | virtual |
| cst_files(core::Size const i) const | protocols::relax::RelaxProtocolBase | inlineprotected |
| def_parameters | protocols::relax::CentroidRelax | private |
| do_final_repack(bool repack_sc) | protocols::relax::CentroidRelax | |
| dry_run() const | protocols::relax::RelaxProtocolBase | inline |
| dry_run(bool setting) | protocols::relax::RelaxProtocolBase | inline |
| explicit_ramp_constraints() const | protocols::relax::RelaxProtocolBase | inline |
| fa_scorefxn_ | protocols::relax::CentroidRelax | private |
| Filters_map typedef | protocols::moves::Mover | |
| fix_omega() const | protocols::relax::RelaxProtocolBase | inlineprotected |
| fix_omega(bool fix_omega) | protocols::relax::RelaxProtocolBase | inlineprotected |
| fresh_instance() const | protocols::relax::RelaxProtocolBase | inlinevirtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_movemap() | protocols::relax::RelaxProtocolBase | inline |
| get_name() const | protocols::relax::CentroidRelax | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_scorefxn() const | protocols::relax::RelaxProtocolBase | inline |
| get_scorefxn() | protocols::relax::RelaxProtocolBase | inlineprotected |
| get_task_factory() const | protocols::relax::RelaxProtocolBase | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_movemap(core::pose::Pose const &pose, core::kinematics::MoveMap &movemap) | protocols::relax::RelaxProtocolBase | protected |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| limit_aroma_chi2() const | protocols::relax::RelaxProtocolBase | inlineprotected |
| max_iter() const | protocols::relax::RelaxProtocolBase | inline |
| max_iter(Size max_iter) | protocols::relax::RelaxProtocolBase | inline |
| min_type() const | protocols::relax::RelaxProtocolBase | inline |
| min_type(std::string min_type) | protocols::relax::RelaxProtocolBase | inline |
| minimize_bond_angles() const | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_bond_angles(bool minimize_bond_angles) | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_bond_lengths() const | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_bond_lengths(bool minimize_bond_lengths) | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_bondangle_subset() const | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_bondangle_subset(int minimize_bondangle_subset) | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_bondlength_subset() const | protocols::relax::RelaxProtocolBase | inlineprotected |
| minimize_bondlength_subset(int minimize_bondlength_subset) | protocols::relax::RelaxProtocolBase | inlineprotected |
| movemap_ | protocols::relax::CentroidRelax | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(Mover const &other) | protocols::moves::Mover | |
| output_debug_structure(core::pose::Pose &pose, std::string prefix) | protocols::relax::RelaxProtocolBase | protected |
| parent typedef | protocols::relax::RelaxProtocolBase | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| rama_type_ | protocols::relax::CentroidRelax | private |
| ramp_down_constraints() const | protocols::relax::RelaxProtocolBase | inline |
| ramp_down_constraints(bool ramp_down_constraints) | protocols::relax::RelaxProtocolBase | inline |
| ramp_rama_ | protocols::relax::CentroidRelax | private |
| ramp_vdw_ | protocols::relax::CentroidRelax | private |
| read_default_parameters() | protocols::relax::CentroidRelax | private |
| register_options() | protocols::relax::RelaxProtocolBase | static |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| RelaxProtocolBase(core::scoring::ScoreFunctionOP) | protocols::relax::RelaxProtocolBase | |
| RelaxProtocolBase(std::string const &movername="RelaxProtocol") | protocols::relax::RelaxProtocolBase | |
| RelaxProtocolBase(std::string const &movername, core::scoring::ScoreFunctionOP) | protocols::relax::RelaxProtocolBase | |
| repack_sc_ | protocols::relax::CentroidRelax | private |
| reset_status() | protocols::moves::Mover | |
| rounds_ | protocols::relax::CentroidRelax | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_cartesian(bool cart) | protocols::relax::CentroidRelax | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_default_coordinate_settings() | protocols::relax::RelaxProtocolBase | |
| set_default_minimization_settings() | protocols::relax::RelaxProtocolBase | |
| set_default_movemap() | protocols::relax::RelaxProtocolBase | |
| set_defaults() | protocols::relax::CentroidRelax | |
| set_fa_score_function(ScoreFunctionOP fa_score) | protocols::relax::CentroidRelax | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_min_type(string min) | protocols::relax::CentroidRelax | |
| set_movemap(core::kinematics::MoveMapOP movemap) | protocols::relax::RelaxProtocolBase | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_ramp_rama(bool use) | protocols::relax::CentroidRelax | |
| set_ramp_vdw(bool use) | protocols::relax::CentroidRelax | |
| set_rounds(Size rounds) | protocols::relax::CentroidRelax | |
| set_score_function(ScoreFunctionOP cen_score) | protocols::relax::CentroidRelax | |
| set_scorefxn(core::scoring::ScoreFunctionOP scorefxn) | protocols::relax::RelaxProtocolBase | inline |
| set_task_factory(core::pack::task::TaskFactoryOP task_factory) | protocols::relax::RelaxProtocolBase | inline |
| set_up_constraints(core::pose::Pose &pose, core::kinematics::MoveMap &local_movemap) | protocols::relax::RelaxProtocolBase | protected |
| set_use_increased_vdw_radii(bool use) | protocols::relax::CentroidRelax | |
| set_use_rama2b(bool use) | protocols::relax::CentroidRelax | |
| setup_class_movemap_and_constraints(Pose &pose) | protocols::relax::CentroidRelax | private |
| setup_increased_vdw_radii() | protocols::relax::CentroidRelax | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| use_increased_vdw_radii_ | protocols::relax::CentroidRelax | private |
| ~CentroidRelax() | protocols::relax::CentroidRelax | virtual |
| ~Mover() | protocols::moves::Mover | virtual |
| ~RelaxProtocolBase() | protocols::relax::RelaxProtocolBase | |
1.8.7