StepWiseRNA_JobParametersUtil.hh File Reference

#include <protocols/stepwise/sampling/rna/StepWiseRNA_JobParametersUtil.fwd.hh>
#include <protocols/stepwise/sampling/rna/StepWiseRNA_JobParameters.fwd.hh>
#include <protocols/toolbox/AllowInsert.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/types.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::sampling
	protocols::stepwise::sampling::rna

Functions
StepWiseRNA_JobParametersOP	protocols::stepwise::sampling::rna::setup_job_parameters_for_swa (Size const rebuild_res, pose::Pose const &pose, pose::PoseCOP native_pose, utility::vector1< Size > const &calc_rms_res, utility::vector1< Size > const &terminal_res, utility::vector1< Size > const &syn_chi_res_list, utility::vector1< Size > const &extra_minimize_res, utility::vector1< Size > &working_fixed_res, utility::vector1< Size > &working_minimize_res, toolbox::AllowInsertOP &allow_insert, kinematics::MoveMapOP &minimize_move_map)
void	protocols::stepwise::sampling::rna::figure_out_root_partition_res (pose::Pose const &pose, StepWiseRNA_JobParametersCOP job_parameters, utility::vector1< Size > &root_partition_res, utility::vector1< Size > &moving_partition_res)
StepWiseRNA_JobParametersOP	protocols::stepwise::sampling::rna::setup_job_parameters_legacy (Size const rebuild_res, pose::Pose const &pose, pose::PoseCOP native_pose, utility::vector1< Size > const &calc_rms_res, utility::vector1< Size > const &terminal_res, utility::vector1< Size > const &syn_chi_res_list, utility::vector1< Size > &working_fixed_res_guess, utility::vector1< Size > &suites_that_must_be_minimized)
StepWiseRNA_JobParametersOP	protocols::stepwise::sampling::rna::setup_job_parameters_explicit (Size const rebuild_res, pose::Pose const &pose, pose::PoseCOP native_pose, utility::vector1< Size > const &calc_rms_res, utility::vector1< Size > const &terminal_res, utility::vector1< Size > const &syn_chi_res_list, utility::vector1< Size > &working_fixed_res_guess, utility::vector1< Size > &suites_that_must_be_minimized)
bool	protocols::stepwise::sampling::rna::figure_out_rebuild_bulge_mode (pose::Pose const &pose, Size const rebuild_res)
bool	protocols::stepwise::sampling::rna::figure_out_sample_both_sugar_base_rotamer (pose::Pose const &pose, bool const floating_base, Size const rebuild_suite)

Detailed Description

Detailed:

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu