#include <ReplicateFilter.hh>

Public Member Functions
	ReplicateFilter ()
	default ctor More...

	ReplicateFilter (protocols::filters::FilterOP subfilter, core::Size replicates=1, core::Size upper_trim=0, core::Size lower_trim=0)

virtual bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

virtual void	report (std::ostream &out, core::pose::Pose const &pose) const

virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

virtual protocols::filters::FilterOP	clone () const

virtual protocols::filters::FilterOP	fresh_instance () const

virtual	~ReplicateFilter ()

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

void	subfilter (protocols::filters::FilterOP subfilter)

void	median (bool median)

void	threshold (core::Real threshold)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
protocols::filters::FilterOP	subfilter_

core::Size	replicates_

core::Size	upper_trim_

core::Size	lower_trim_

bool	median_

core::Real	threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::filters::ReplicateFilter::ReplicateFilter ( )

default ctor

Referenced by clone(), and fresh_instance().

protocols::filters::ReplicateFilter::ReplicateFilter	(	protocols::filters::FilterOP	subfilter,
		core::Size	replicates = `1`,
		core::Size	upper_trim = `0`,
		core::Size	lower_trim = `0`
	)

virtual protocols::filters::ReplicateFilter::~ReplicateFilter ( )

inlinevirtual

Member Function Documentation

bool protocols::filters::ReplicateFilter::apply ( core::pose::Pose const & pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), and threshold_.

virtual protocols::filters::FilterOP protocols::filters::ReplicateFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References ReplicateFilter().

core::Real protocols::filters::ReplicateFilter::compute ( core::pose::Pose const & pose ) const

References lower_trim_, numeric::mean(), numeric::median(), median_, replicates_, protocols::filters::Filter::report_sm(), runtime_assert, subfilter_, protocols::filters::TR, and upper_trim_.

Referenced by apply(), report(), and report_sm().

virtual protocols::filters::FilterOP protocols::filters::ReplicateFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References ReplicateFilter().

void protocols::filters::ReplicateFilter::median ( bool median )

inline

References median(), and median_.

Referenced by median().

void protocols::filters::ReplicateFilter::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	,
		protocols::filters::Filters_map const &	filters,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)