| add_to_pose_list(utility::vector1< pose::PoseOP > &pose_list, pose::Pose const &pose, std::string const pose_tag) const | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| allow_insert_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| apply(pose::Pose &pose) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| base_centroid_checker_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| calc_rms_res_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| clone_modeler() const | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| create() | protocols::moves::Mover | virtual |
| do_minimizing(pose::Pose &pose, utility::vector1< PoseOP > &pose_list) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| do_residue_sampling(pose::Pose &pose, utility::vector1< PoseOP > &pose_list) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_num_sampled() | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_job_parameters_and_root(pose::Pose &pose) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| initialize_variables() | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| job_parameters_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| minimize_move_map_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| minimizer_extra_minimize_res_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| moving_res_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| name() | protocols::moves::Mover | inlinestatic |
| native_pose_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| num_sampled_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| operator=(StepWiseRNA_Modeler const &src) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| protocols::moves::Mover::operator=(Mover const &other) | protocols::moves::Mover | |
| options() | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| options_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| output_pose(pose::Pose &pose, std::string const &out_tag, std::string const out_silent_file) const | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| sampling_successful(utility::vector1< PoseOP > &pose_list) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| set_calc_rms_res(utility::vector1< Size > const &setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_job_parameters(StepWiseRNA_JobParametersCOP job_parameters) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_minimizer_extra_minimize_res(utility::vector1< core::Size > const &setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | inline |
| set_moving_res_and_reset(Size const moving_res) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_options(StepWiseRNA_ModelerOptionsCOP options) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| set_silent_file(std::string const &setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | inline |
| set_skip_sampling(bool const &setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| set_syn_chi_res_list(utility::vector1< core::Size > const &setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | inline |
| set_terminal_res(utility::vector1< Size > const &setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | inline |
| set_working_fixed_res(utility::vector1< Size > const &setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | inline |
| set_working_minimize_res(utility::vector1< Size > const &setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | inline |
| setup_job_parameters_for_stepwise_with_full_model_info(core::pose::Pose &pose) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| silent_file_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| stepwise_rna_minimizer_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| StepWiseRNA_Modeler(scoring::ScoreFunctionOP scorefxn) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| StepWiseRNA_Modeler(Size const sample_res, scoring::ScoreFunctionOP scorefxn) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| StepWiseRNA_Modeler(StepWiseRNA_Modeler const &src) | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
| Strings typedef | protocols::moves::Mover | |
| syn_chi_res_list_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| TagCOP typedef | protocols::moves::Mover | |
| terminal_res_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| user_input_VDW_bin_checker_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| VDW_rep_screen_info_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| working_fixed_res_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| working_minimize_res_ | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | private |
| ~Mover() | protocols::moves::Mover | virtual |
| ~StepWiseRNA_Modeler() | protocols::stepwise::sampling::rna::StepWiseRNA_Modeler | |
1.8.7