StepWiseRNA_ResidueInfo.cc File Reference

#include <protocols/stepwise/sampling/rna/StepWiseRNA_Util.hh>
#include <protocols/stepwise/sampling/rna/StepWiseRNA_ResidueInfo.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/AtomType.hh>
#include <string>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <basic/Tracer.hh>
#include <iostream>
#include <fstream>
#include <sstream>
#include <utility/vector1.hh>
#include <map>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::sampling
	protocols::stepwise::sampling::rna

Functions
void	protocols::stepwise::sampling::rna::print_torsion_info (core::pose::Pose const &pose, core::Size const seq_num, core::Size const rna_torsion_number, std::string const type)
utility::vector1< Residue_info >	protocols::stepwise::sampling::rna::Convert_rebuild_residue_string_to_list (std::string const &rebuild_residue_string)
void	protocols::stepwise::sampling::rna::output_residue_struct (Residue_info const &residue)
std::string	protocols::stepwise::sampling::rna::get_one_letter_name (std::string const &three_letter_name)
std::string	protocols::stepwise::sampling::rna::get_three_letter_name (std::string const &one_letter_name)
Size	protocols::stepwise::sampling::rna::get_max_seq_num_from_res_map (std::map< core::Size, core::Size > const &my_map)
void	protocols::stepwise::sampling::rna::output_res_map (std::map< core::Size, core::Size > const &my_map, Size const max_seq_num)
void	protocols::stepwise::sampling::rna::output_copy_dofs (utility::vector1< Residue_info > copy_dofs)
utility::vector1< Residue_info >	protocols::stepwise::sampling::rna::get_copy_dofs_from_fasta (std::string const full_fasta_sequence)
Residue_info	protocols::stepwise::sampling::rna::get_residue_from_seq_num (Size const &seq_num, utility::vector1< Residue_info > const &copy_dofs)
bool	protocols::stepwise::sampling::rna::contain_residue_at_seq_num (Size seq_num, utility::vector1< Residue_info > const &copy_dofs)
utility::vector1 < utility::vector1 < Residue_info > >	protocols::stepwise::sampling::rna::create_strand_list (utility::vector1< Residue_info > const &copy_dofs)
utility::vector1< Residue_info >	protocols::stepwise::sampling::rna::set_difference (utility::vector1< Residue_info > const &copy_dofs_1, utility::vector1< Residue_info > const &copy_dofs_2)
utility::vector1< Residue_info >	protocols::stepwise::sampling::rna::set_union (utility::vector1< Residue_info > const &copy_dofs_1, utility::vector1< Residue_info > const &copy_dofs_2)
bool	protocols::stepwise::sampling::rna::copy_dofs_sort_criterion (Residue_info residue_info_1, Residue_info residue_info_2)
void	protocols::stepwise::sampling::rna::sort_copy_dofs (utility::vector1< Residue_info > &copy_dofs)

Variables
static basic::Tracer	TR ("protocols.stepwise.rna.StepWiseRNA_ResidueInfo")

Variable Documentation

basic::Tracer TR("protocols.stepwise.rna.StepWiseRNA_ResidueInfo")

static

Referenced by protocols::stepwise::sampling::rna::get_max_seq_num_from_res_map(), protocols::stepwise::sampling::rna::get_one_letter_name(), protocols::stepwise::sampling::rna::get_residue_from_seq_num(), protocols::stepwise::sampling::rna::get_three_letter_name(), protocols::stepwise::sampling::rna::output_copy_dofs(), protocols::stepwise::sampling::rna::output_res_map(), protocols::stepwise::sampling::rna::output_residue_struct(), and protocols::stepwise::sampling::rna::print_torsion_info().