Creates networks based on covalent connections between residues. More...

#include <NetworkAlgorithms.hh>

Public Member Functions
virtual void	generate_edges (core::pose::Pose const &pose)
	generate a list of edges from the pose – MUST be reimplemented for each type of network More...

Public Member Functions inherited from protocols::toolbox::ResidueNetwork
	ResidueNetwork ()
	default constructor More...

virtual	~ResidueNetwork ()
	destructor More...

void	create_from_pose (core::pose::Pose const &pose)
	create a network from a pose More...

void	clear_edges ()
	empties edges More...

void	dijkstras (core::Size const resi) const
	run Dijkstra's shortest path algorithm on the given list of nodes after execution, the "distanceFromStart" variable of each node will contain the distance from residue resi More...

core::Real	connectivity_index (core::Size const resi) const
	calculates the connectivity index of residue resi in the context of the network More...

core::Real	average_shortest_path_length () const
	calculates the average shortest path length of the network More...

std::list< NodeOP > const &	nodes () const

Detailed Description

Creates networks based on covalent connections between residues.

Member Function Documentation

void protocols::toolbox::CovalentResidueNetwork::generate_edges ( core::pose::Pose const & pose )

virtual

generate a list of edges from the pose – MUST be reimplemented for each type of network

The documentation for this class was generated from the following files: