| apply_internal_coordinates(ParameterList const &bond_lengths, ParameterList const &bond_angles, ParameterList const &torsion_angles, Pose &pose) const | protocols::kinematic_closure::ClosureProblem | private |
| c_n(Size residue) const | protocols::kinematic_closure::ClosureProblem | |
| c_n_ca(Size residue, AngleUnit unit) const | protocols::kinematic_closure::ClosureProblem | |
| ca_c(Size residue) const | protocols::kinematic_closure::ClosureProblem | |
| ca_c_n(Size residue, AngleUnit unit) const | protocols::kinematic_closure::ClosureProblem | |
| ClosureProblem() | protocols::kinematic_closure::ClosureProblem | |
| ClosureSolution class | protocols::kinematic_closure::ClosureProblem | friend |
| cut_residue() const | protocols::kinematic_closure::ClosureProblem | |
| extract_cartesian_coordinates(Pose const &pose, CoordinateList &atom_xyzs) const | protocols::kinematic_closure::ClosureProblem | private |
| extract_internal_coordinates(CoordinateList const &atom_xyzs, ParameterList &bond_lengths, ParameterList &bond_angles, ParameterList &torsion_angles) const | protocols::kinematic_closure::ClosureProblem | private |
| extract_internal_coordinates(Pose const &pose, ParameterList &bond_lengths, ParameterList &bond_angles, ParameterList &torsion_angles) const | protocols::kinematic_closure::ClosureProblem | private |
| first_residue() const | protocols::kinematic_closure::ClosureProblem | |
| frame(Pose const &pose, Loop const &loop, pivot_pickers::PivotPickerOP pivot_picker) | protocols::kinematic_closure::ClosureProblem | |
| frame_called_ | protocols::kinematic_closure::ClosureProblem | private |
| frame_lower_pivot(Pose const &pose, CoordinateList &atom_xyzs) const | protocols::kinematic_closure::ClosureProblem | private |
| frame_upper_pivot(Pose const &pose, CoordinateList &atom_xyzs) const | protocols::kinematic_closure::ClosureProblem | private |
| id_from_index(Size index) const | protocols::kinematic_closure::ClosureProblem | private |
| ids_span_cut(core::id::AtomID left, core::id::AtomID right) const | protocols::kinematic_closure::ClosureProblem | private |
| is_nonpivot_residue(Size residue) const | protocols::kinematic_closure::ClosureProblem | |
| is_pivot_residue(Size residue) const | protocols::kinematic_closure::ClosureProblem | |
| last_residue() const | protocols::kinematic_closure::ClosureProblem | |
| Memento class | protocols::kinematic_closure::ClosureProblem | friend |
| n_ca(Size residue) const | protocols::kinematic_closure::ClosureProblem | |
| n_ca_c(Size residue, AngleUnit unit) const | protocols::kinematic_closure::ClosureProblem | |
| nonpivot_residues() const | protocols::kinematic_closure::ClosureProblem | |
| num_atoms() const | protocols::kinematic_closure::ClosureProblem | |
| num_residues() const | protocols::kinematic_closure::ClosureProblem | |
| omega(Size residue, AngleUnit unit) const | protocols::kinematic_closure::ClosureProblem | |
| perturb_c_n(Size residue, Real value) | protocols::kinematic_closure::ClosureProblem | |
| perturb_c_n_ca(Size residue, Real value, AngleUnit unit) | protocols::kinematic_closure::ClosureProblem | |
| perturb_ca_c(Size residue, Real value) | protocols::kinematic_closure::ClosureProblem | |
| perturb_ca_c_n(Size residue, Real value, AngleUnit unit) | protocols::kinematic_closure::ClosureProblem | |
| perturb_n_ca(Size residue, Real value) | protocols::kinematic_closure::ClosureProblem | |
| perturb_n_ca_c(Size residue, Real value, AngleUnit unit) | protocols::kinematic_closure::ClosureProblem | |
| perturb_omega(Size residue, Real value, AngleUnit unit) | protocols::kinematic_closure::ClosureProblem | |
| perturb_phi(Size residue, Real value, AngleUnit unit) | protocols::kinematic_closure::ClosureProblem | |
| perturb_psi(Size residue, Real value, AngleUnit unit) | protocols::kinematic_closure::ClosureProblem | |
| perturbed_angles_ | protocols::kinematic_closure::ClosureProblem | private |
| perturbed_lengths_ | protocols::kinematic_closure::ClosureProblem | private |
| perturbed_torsions_ | protocols::kinematic_closure::ClosureProblem | private |
| phi(Size residue, AngleUnit unit) const | protocols::kinematic_closure::ClosureProblem | |
| pivot_atoms() const | protocols::kinematic_closure::ClosureProblem | |
| pivot_loop() const | protocols::kinematic_closure::ClosureProblem | |
| pivot_residues() const | protocols::kinematic_closure::ClosureProblem | |
| pivots_ | protocols::kinematic_closure::ClosureProblem | private |
| psi(Size residue, AngleUnit unit) const | protocols::kinematic_closure::ClosureProblem | |
| residues() const | protocols::kinematic_closure::ClosureProblem | |
| restore(Pose &pose) const | protocols::kinematic_closure::ClosureProblem | |
| solve() const | protocols::kinematic_closure::ClosureProblem | |
| unperturbed_angles_ | protocols::kinematic_closure::ClosureProblem | private |
| unperturbed_lengths_ | protocols::kinematic_closure::ClosureProblem | private |
| unperturbed_torsions_ | protocols::kinematic_closure::ClosureProblem | private |
| unperturbed_xyzs_ | protocols::kinematic_closure::ClosureProblem | private |
| ~ClosureProblem() | protocols::kinematic_closure::ClosureProblem | |
1.8.7