Matker class that produces a new PCS_FragDistance object. More...

#include <PCS_FragDistance.hh>

Public Member Functions
	MakePCS_FragDistance ()

FragmentScoringMethodOP	make (Size, Real, bool, FragmentPickerOP, std::string)
	Creates a PCS_FragDistance scoring method. More...

Public Member Functions inherited from protocols::frag_picker::scores::MakeFragmentScoringMethod
	MakeFragmentScoringMethod (std::string name)

std::string &	get_score_name ()

Detailed Description

Matker class that produces a new PCS_FragDistance object.

Constructor & Destructor Documentation

protocols::frag_picker::scores::MakePCS_FragDistance::MakePCS_FragDistance ( )

inline

FragmentScoringMethodOP protocols::frag_picker::scores::MakePCS_FragDistance::make	(	Size	priority,
		Real	lowest_acceptable_value,
		bool	use_lowest,
		FragmentPickerOP	picker,
		std::string
	)

virtual

Creates a PCS_FragDistance scoring method.

Parameters

priority	- priority of the scoring method. The higher value the earlier the score will be evaluated
lowest_acceptable_value	- if a calculated score is higher than this value, fragment will be neglected
FragmentPickerOP	object - not used
line	- the relevant line extracted from the scoring configuration file that defines this scoring method It could look like: "PCS_FragDistance 140 -5.0 100.0 additional_string" where 140, -5.0 && 100.0 are priority, weight && treshold, respectively. The additional string may be: empty: then the maker tries to create a scoring object from a TALOS file trying in::file::talos_phi_psi flag. If fails, will try to use a pose from in::file::s a pdb file, pdb extension is necessary. This will create a pose && steal Phi && Psi a TALOS file with Phi/Psi prediction (tab extension is necessary)

The documentation for this class was generated from the following files: