protocols::simple_filters::GeometryFilter Class Reference

#include <GeometryFilter.hh>

Public Member Functions
	GeometryFilter ()
bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const
core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
filters::FilterOP	clone () const
filters::FilterOP	fresh_instance () const
virtual	~GeometryFilter ()
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Attributes
core::Real	omega_cutoff_
core::Real	cart_bonded_cutoff_
std::string	filename_
core::Real	cst_cutoff_
core::Size	start_
core::Size	end_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::GeometryFilter::GeometryFilter ( )

inline

References filters.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::GeometryFilter::~GeometryFilter ( )

virtual

Member Function Documentation

bool protocols::simple_filters::GeometryFilter::apply ( core::pose::Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), status, and protocols::simple_filters::TR.

filters::FilterOP protocols::simple_filters::GeometryFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References GeometryFilter().

core::Real protocols::simple_filters::GeometryFilter::compute

(

core::pose::Pose const &

pose

)

const

References protocols::simple_moves::ConstraintSetMover::apply(), core::scoring::atom_pair_constraint, atom_pair_constraint, cart_bonded, cart_bonded_cutoff_, protocols::simple_moves::ConstraintSetMover::constraint_file(), cst_cutoff_, end_, extract_asymmetric_unit(), filename_, core::scoring::getScoreFunction(), is_symmetric(), protocols::stepwise::sampling::protein::omega(), omega_cutoff_, protocols::filters::Filter::score(), start_, protocols::simple_filters::TR, core::pose::Pose::update_residue_neighbors(), and weight.

Referenced by apply(), report(), and report_sm().

filters::FilterOP protocols::simple_filters::GeometryFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References GeometryFilter().

void protocols::simple_filters::GeometryFilter::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  , filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &    )

virtual

Reimplemented from protocols::filters::Filter.

References cart_bonded_cutoff_, cst_cutoff_, end_, filename_, omega_cutoff_, and start_.

void protocols::simple_filters::GeometryFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::GeometryFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

core::Real protocols::simple_filters::GeometryFilter::cart_bonded_cutoff_

private

Referenced by compute(), and parse_my_tag().

core::Real protocols::simple_filters::GeometryFilter::cst_cutoff_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::simple_filters::GeometryFilter::end_

private

Referenced by compute(), and parse_my_tag().

std::string protocols::simple_filters::GeometryFilter::filename_

private

Referenced by compute(), and parse_my_tag().

core::Real protocols::simple_filters::GeometryFilter::omega_cutoff_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::simple_filters::GeometryFilter::start_

private

Referenced by compute(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/simple_filters/GeometryFilter.hh
• symlinks/rosetta/src/protocols/simple_filters/GeometryFilter.cc