protocols::loop_modeling::LoopProtocol Member List

This is the complete list of members for protocols::loop_modeling::LoopProtocol, including all inherited members.

add_acceptance_check(string name="loop_move")	protocols::loop_modeling::LoopProtocol
add_filter(protocols::filters::FilterOP filter)	protocols::loop_modeling::LoopProtocol
add_logger(loggers::LoggerOP logger)	protocols::loop_modeling::LoopProtocol
add_mover(LoopMoverOP mover)	protocols::loop_modeling::LoopProtocol
apply(Pose &pose)	protocols::loop_modeling::LoopMover	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
attempt_loop_move(Pose &pose, Size i, Size j, Size k)	protocols::loop_modeling::LoopProtocol	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
create()	protocols::moves::Mover	virtual
do_apply(Pose &pose)	protocols::loop_modeling::LoopProtocol	protectedvirtual
protocols::loop_modeling::LoopMover::do_apply(Pose &pose, Loop const &loop)	protocols::loop_modeling::LoopMover	protectedvirtual
Filters_map typedef	protocols::moves::Mover
final_temperature_	protocols::loop_modeling::LoopProtocol	private
finish_protocol(Pose &pose)	protocols::loop_modeling::LoopProtocol	private
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_loops() const	protocols::loop_modeling::LoopMover
get_name() const	protocols::loop_modeling::LoopProtocol	inlinevirtual
get_native_pose() const	protocols::moves::Mover
get_score_function() const	protocols::loop_modeling::LoopMover
get_score_function()	protocols::loop_modeling::LoopMover
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
initial_temperature_	protocols::loop_modeling::LoopProtocol	private
iterations_	protocols::loop_modeling::LoopProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
loggers_	protocols::loop_modeling::LoopProtocol	private
LoopMover()	protocols::loop_modeling::LoopMover
LoopProtocol()	protocols::loop_modeling::LoopProtocol
monte_carlo_	protocols::loop_modeling::LoopProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
movers_	protocols::loop_modeling::LoopProtocol	private
name()	protocols::moves::Mover	inlinestatic
operator=(Mover const &other)	protocols::moves::Mover
original_tree_	protocols::loop_modeling::LoopProtocol	private
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
ramp_score_function(Size iteration)	protocols::loop_modeling::LoopProtocol	private
ramp_score_function_	protocols::loop_modeling::LoopProtocol	private
ramp_temperature(Size iteration)	protocols::loop_modeling::LoopProtocol	private
ramp_temperature_	protocols::loop_modeling::LoopProtocol	private
register_nested_loop_mover(LoopMoverOP mover)	protocols::loop_modeling::LoopMover	protected
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
request_fold_tree() const	protocols::loop_modeling::LoopMover	virtual
reset_status()	protocols::moves::Mover
save_state(SerializableState &state)	protocols::moves::Mover	virtual
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_iterations(IndexList values)	protocols::loop_modeling::LoopProtocol
set_iterations(Size i, Size j, Size k)	protocols::loop_modeling::LoopProtocol
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_loop(Loop const &loop)	protocols::loop_modeling::LoopMover
set_loops(Loops const &loops)	protocols::loop_modeling::LoopMover
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_score_function(core::scoring::ScoreFunctionOP sfxn)	protocols::loop_modeling::LoopMover
set_score_function_ramping(bool value)	protocols::loop_modeling::LoopProtocol
set_temperature_ramping(bool value)	protocols::loop_modeling::LoopProtocol
set_temperature_schedule(Real initial, Real final)	protocols::loop_modeling::LoopProtocol
setup_fold_tree(Pose &pose, Loops const &loops, FoldTreeRequest request)	protocols::loop_modeling::LoopMover	static
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
start_protocol(Pose &pose)	protocols::loop_modeling::LoopProtocol	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
temperature_scale_factor_	protocols::loop_modeling::LoopProtocol	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
trust_fold_tree()	protocols::loop_modeling::LoopMover
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
was_successful() const	protocols::loop_modeling::LoopMover
~LoopMover()	protocols::loop_modeling::LoopMover
~LoopProtocol()	protocols::loop_modeling::LoopProtocol
~Mover()	protocols::moves::Mover	virtual