protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler Member List

This is the complete list of members for protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler, including all inherited members.

anchor_sugar_modeling_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
anchor_sugar_screener_legacy_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
apply(pose::Pose &pose_to_visualize)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	virtual
protocols::moves::MoverForPoseList::apply(utility::vector1< core::pose::PoseOP > &pose_list)	protocols::moves::MoverForPoseList	virtual
protocols::moves::MoverForPoseList::apply(utility::vector1< core::pose::PoseOP > &pose_list, core::pose::Pose &viewer_pose)	protocols::moves::MoverForPoseList	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
atr_rep_checker_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
atr_rep_checker_with_instantiated_sugar_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
atr_rep_checkers_for_anchor_sugar_models_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
base_bin_map_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
base_centroid_checker_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
centroid_bin_max_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
centroid_bin_min_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
centroid_bin_size_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
chain_break_reference_res_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
chain_break_to_anchor_checker_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
chain_break_to_distal_checker_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
chain_closable_geometry_to_anchor_checker_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
chain_closable_geometry_to_distal_checker_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
close_chain_to_anchor_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
close_chain_to_distal_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
count_data_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
create()	protocols::moves::Mover	virtual
define_rigid_body_rotamer(pose::Pose const &pose)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
euler_angle_bin_max_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
euler_angle_bin_min_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
euler_angle_bin_size_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
euler_z_bin_max_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
euler_z_bin_min_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
euler_z_bin_size_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
extra_tag_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
Filters_map typedef	protocols::moves::Mover
five_prime_chain_break_res_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
floating_base_five_prime_chain_break_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
floating_base_three_prime_chain_break_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
fresh_instance() const	protocols::moves::Mover	virtual
full_pose_level_screening_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
gap_size_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
gap_size_to_anchor_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	virtual
get_native_pose() const	protocols::moves::Mover
get_pose_list()	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler
get_reference_stub(pose::Pose const &pose) const	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
initialize_euler_angle_grid_parameters()	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
initialize_pose_level_screeners(pose::Pose &pose)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
initialize_poses_and_stubs_and_checkers(pose::Pose &pose)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
initialize_residue_level_screeners(pose::Pose &pose)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
initialize_rigid_body_sampler(pose::Pose const &pose)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
initialize_screeners(pose::Pose &pose)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
initialize_xyz_grid_parameters()	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
is_dinucleotide_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
is_internal_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
is_prepend_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
job_parameters_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
legacy_mode_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
max_distance_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
max_distance_squared_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
max_ntries_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
MoverForPoseList()	protocols::moves::MoverForPoseList
moving_res_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
moving_res_base_stub_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
moving_rsd_at_origin_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
moving_rsd_at_origin_from_sampler_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
moving_rsd_at_origin_list_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
moving_suite_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
name()	protocols::moves::Mover	inlinestatic
native_rmsd_screen_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
num_pose_kept_to_use_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
o2prime_instantiation_distance_cutoff_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
o2prime_packer_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
operator=(Mover const &other)	protocols::moves::Mover
options_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
phosphate_sampler_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
Pose typedef	protocols::moves::Mover
pose_at_origin_list_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
pose_list_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
pose_selection_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
PoseCOP typedef	protocols::moves::Mover
reference_res_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
reference_stub_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reinstantiate_backbone_and_add_constraint_at_moving_res(pose::Pose &pose, Size const &five_prime_chain_break_res)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
reset_status()	protocols::moves::Mover
residue_level_screening_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
rigid_body_sampling_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
sampler_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
save_state(SerializableState &state)	protocols::moves::Mover	virtual
scorefxn_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
screeners_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
screening_moving_rsd_at_origin_list_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
screening_pose_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
set_anchor_sugar_modeling(sugar::SugarModeling const &anchor_sugar_modeling)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler
set_base_centroid_checker(checker::RNA_BaseCentroidCheckerOP &checker)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_options(StepWiseRNA_ModelerOptionsCOP options)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler
set_scorefxn(scoring::ScoreFunctionOP const &scorefxn)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler
set_silent_file(std::string const &setting)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	inline
set_user_input_VDW_bin_checker(checker::RNA_VDW_BinCheckerOP const &user_input_VDW_bin_checker)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
silent_file_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
StepWiseRNA_RigidBodySampler(StepWiseRNA_JobParametersCOP &job_parameters_)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler
Strings typedef	protocols::moves::Mover
sugar_screening_moving_rsd_at_origin_list_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
sugar_screening_pose_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
tag_definition_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
try_sugar_instantiation_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
update_base_bin_map(rna::rigid_body::BaseBin const &base_bin)	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
user_input_VDW_bin_checker_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
VDW_bin_checker_	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler	private
~Mover()	protocols::moves::Mover	virtual
~MoverForPoseList()	protocols::moves::MoverForPoseList
~StepWiseRNA_RigidBodySampler()	protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_RigidBodySampler