RNA_HelixAssembler.cc File Reference

#include <protocols/stepwise/sampling/rna/helix/RNA_HelixAssembler.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/PDBInfo.hh>
#include <utility/vector1.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pose/rna/RNA_Util.hh>
#include <core/io/pdb/file_data.hh>
#include <core/chemical/rna/RNA_Util.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <protocols/farna/RNA_ProtocolUtil.hh>
#include <basic/database/open.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <numeric/xyzVector.hh>
#include <core/types.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/Tracer.hh>
#include <numeric/random/random.hh>
#include <vector>
#include <string>
#include <sstream>
#include <core/pose/annotated_sequence.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::sampling
	protocols::stepwise::sampling::rna
	protocols::stepwise::sampling::rna::helix

Typedefs
typedef numeric::xyzMatrix< Real >	Matrix

Functions
bool	protocols::stepwise::sampling::rna::helix::is_blank_seq (char const &c)

Variables
static basic::Tracer	TR ("protocols.rna.RNA_HelixAssembler")
static numeric::random::RandomGenerator	protocols::stepwise::sampling::rna::helix::RG (17720)

Typedef Documentation

typedef numeric::xyzMatrix< Real > Matrix

Variable Documentation

basic::Tracer TR("protocols.rna.RNA_HelixAssembler")

static