StepWiseRNA_OutputData.cc File Reference

Output silent_file_data functions for Stepwise Assembly RNA. More...

#include <protocols/stepwise/sampling/rna/StepWiseRNA_OutputData.hh>
#include <protocols/stepwise/sampling/rna/StepWiseRNA_Classes.hh>
#include <protocols/stepwise/sampling/rna/StepWiseRNA_Util.hh>
#include <protocols/stepwise/sampling/rna/rigid_body/StepWiseRNA_FloatingBaseSamplerUtil.hh>
#include <protocols/stepwise/sampling/rna/StepWiseRNA_ResidueInfo.hh>
#include <protocols/stepwise/sampling/rna/StepWiseRNA_JobParameters.hh>
#include <protocols/rotamer_sampler/rigid_body/EulerAngles.hh>
#include <protocols/farna/RNA_BasePairClassifier.hh>
#include <core/scoring/rna/RNA_BaseDoubletClasses.hh>
#include <core/scoring/ScoreType.hh>
#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/util.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/io/silent/SilentFileData.fwd.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/rotamer_trials.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/chemical/rna/RNA_FittedTorsionInfo.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/AngleConstraint.hh>
#include <core/scoring/constraints/util.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <numeric/conversions.hh>
#include <numeric/NumericTraits.hh>
#include <basic/Tracer.hh>
#include <iostream>
#include <fstream>
#include <sstream>
#include <ObjexxFCL/format.hh>
#include <set>
#include <time.h>
#include <map>
#include <stdio.h>
#include <ios>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::sampling
	protocols::stepwise::sampling::rna

Functions
core::io::silent::BinarySilentStruct	protocols::stepwise::sampling::rna::get_binary_rna_silent_struct_safe (pose::Pose const &const_pose, std::string const &tag, std::string const &silent_file)
core::io::silent::BinarySilentStruct	protocols::stepwise::sampling::rna::get_binary_rna_silent_struct_safe_wrapper (pose::Pose const &const_pose, std::string const &tag, std::string const &silent_file, bool const write_score_only)
void	protocols::stepwise::sampling::rna::output_data (std::string const &silent_file, std::string const &tag, bool const write_score_only, pose::Pose const &pose, core::pose::PoseCOP native_poseCOP, StepWiseRNA_JobParametersCOP job_parameters_)
void	protocols::stepwise::sampling::rna::output_data (core::io::silent::SilentFileData &silent_file_data, std::string const &silent_file, std::string const &tag, bool const write_score_only, pose::Pose const &pose, core::pose::PoseCOP native_poseCOP, StepWiseRNA_JobParametersCOP job_parameters_)

Variables
static basic::Tracer	TR ("protocols.stepwise.rna.StepWiseRNA_OutputData")

Detailed Description

Output silent_file_data functions for Stepwise Assembly RNA.

(created on Sept 26, 2011)

Detailed:

Author

Parin Sripakdeevong

Variable Documentation

basic::Tracer TR("protocols.stepwise.rna.StepWiseRNA_OutputData")

static

Referenced by protocols::stepwise::sampling::rna::get_binary_rna_silent_struct_safe().