protocols::inputter::FastaInputter Class Reference

#include <FastaInputter.hh>

Public Member Functions
	FastaInputter ()
virtual	~FastaInputter ()
core::pose::PoseSP	get_nth_pose (int n=1)
bool	has_nth_pose (int n=1)
InputterSP	create ()
Public Member Functions inherited from protocols::inputter::Inputter
	Inputter ()
virtual	~Inputter ()
bool	offset ()

Static Public Member Functions
static std::string	name ()
Static Public Member Functions inherited from protocols::inputter::Inputter
static std::string	name ()

Private Attributes
std::deque< std::pair< int, std::string > >	file_names_
int	multiplier_
bool	multiply_over_all_
core::Size	curr_idx_
std::string	residue_set_

Additional Inherited Members
Protected Attributes inherited from protocols::inputter::Inputter
bool	offset_

Constructor & Destructor Documentation

protocols::inputter::FastaInputter::FastaInputter ( )

inline

Referenced by create().

protocols::inputter::FastaInputter::~FastaInputter ( )

virtual

Member Function Documentation

InputterSP protocols::inputter::FastaInputter::create ( )

virtual

Implements protocols::inputter::Inputter.

References FastaInputter().

core::pose::PoseSP protocols::inputter::FastaInputter::get_nth_pose ( int  n = 1 )

virtual

Implements protocols::inputter::Inputter.

References core::pose::add_comment(), curr_idx_, file_names_, core::chemical::ChemicalManager::get_instance(), core::pose::make_pose_from_sequence(), multiplier_, multiply_over_all_, protocols::inputter::Inputter::offset_, core::sequence::read_fasta_file_str(), residue_set_, core::chemical::ChemicalManager::residue_type_set(), and utility::to_string().

bool protocols::inputter::FastaInputter::has_nth_pose ( int  n = 1 )

virtual

Implements protocols::inputter::Inputter.

References file_names_, multiplier_, and sum().

static std::string protocols::inputter::FastaInputter::name ( )

inlinestatic

Member Data Documentation

core::Size protocols::inputter::FastaInputter::curr_idx_

private

Referenced by get_nth_pose().

std::deque< std::pair< int, std::string> > protocols::inputter::FastaInputter::file_names_

private

Referenced by get_nth_pose(), and has_nth_pose().

int protocols::inputter::FastaInputter::multiplier_

private

Referenced by get_nth_pose(), and has_nth_pose().

bool protocols::inputter::FastaInputter::multiply_over_all_

private

Referenced by get_nth_pose().

std::string protocols::inputter::FastaInputter::residue_set_

private

Referenced by get_nth_pose().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/inputter/FastaInputter.hh
• symlinks/rosetta/src/protocols/inputter/FastaInputter.cc