protocols::toolbox::task_operations::ThreadSequenceOperation Class Reference

#include <ThreadSequenceOperation.hh>

Public Types
typedef RestrictOperationsBase	parent
Public Types inherited from protocols::toolbox::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent

Public Member Functions
	ThreadSequenceOperation ()
	ThreadSequenceOperation (std::string const seq)
virtual	~ThreadSequenceOperation ()
virtual TaskOperationOP	clone () const
virtual void	target_sequence (std::string const seq)
virtual std::string	target_sequence () const
virtual void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const
virtual void	parse_tag (TagCOP, DataMap &)
core::Size	start_res () const
void	start_res (core::Size const s)
bool	allow_design_around () const
void	allow_design_around (bool const b)
Public Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()
virtual	~RestrictOperationsBase ()

Private Attributes
std::string	target_sequence_
core::Size	start_res_
bool	allow_design_around_

Additional Inherited Members
Protected Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

typedef RestrictOperationsBase protocols::toolbox::task_operations::ThreadSequenceOperation::parent

Constructor & Destructor Documentation

protocols::toolbox::task_operations::ThreadSequenceOperation::ThreadSequenceOperation

(

)

References start_res(), and target_sequence().

Referenced by clone().

protocols::toolbox::task_operations::ThreadSequenceOperation::ThreadSequenceOperation

(

std::string const

seq

)

References target_sequence().

protocols::toolbox::task_operations::ThreadSequenceOperation::~ThreadSequenceOperation ( )

virtual

Member Function Documentation

bool protocols::toolbox::task_operations::ThreadSequenceOperation::allow_design_around ( ) const

inline

References allow_design_around_.

Referenced by protocols::toolbox::task_operations::DatabaseThread::apply(), apply(), and parse_tag().

void protocols::toolbox::task_operations::ThreadSequenceOperation::allow_design_around ( bool const  b )

inline

References allow_design_around_, and protocols::match::upstream::b.

void protocols::toolbox::task_operations::ThreadSequenceOperation::apply ( core::pose::Pose const &  pose, core::pack::task::PackerTask &  task  ) const

virtual

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

References aa_from_oneletter_code(), allow_design_around(), core::pack::task::operation::RestrictAbsentCanonicalAAS::apply(), core::pack::task::operation::RestrictAbsentCanonicalAAS::include_residue(), core::pack::task::operation::RestrictAbsentCanonicalAAS::keep_aas(), length, num_canonical_aas, resi, runtime_assert, start_res(), target_sequence(), target_sequence_, and core::pose::Pose::total_residue().

Referenced by protocols::toolbox::task_operations::DatabaseThread::apply().

core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::ThreadSequenceOperation::clone ( ) const

virtual

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

References ThreadSequenceOperation().

void protocols::toolbox::task_operations::ThreadSequenceOperation::parse_tag ( TagCOP  tag, DataMap &    )

virtual

References allow_design_around(), start_res(), target_sequence(), and protocols::TR.

core::Size protocols::toolbox::task_operations::ThreadSequenceOperation::start_res

(

)

const

References start_res_.

Referenced by protocols::toolbox::task_operations::DatabaseThread::apply(), apply(), parse_tag(), and ThreadSequenceOperation().

void protocols::toolbox::task_operations::ThreadSequenceOperation::start_res

(

core::Size const

s

)

References start_res_.

void protocols::toolbox::task_operations::ThreadSequenceOperation::target_sequence ( std::string const  seq )

virtual

References target_sequence_.

Referenced by protocols::toolbox::task_operations::DatabaseThread::apply().

std::string protocols::toolbox::task_operations::ThreadSequenceOperation::target_sequence ( ) const

virtual

References target_sequence_.

Referenced by apply(), parse_tag(), and ThreadSequenceOperation().

Member Data Documentation

bool protocols::toolbox::task_operations::ThreadSequenceOperation::allow_design_around_

private

Referenced by allow_design_around().

core::Size protocols::toolbox::task_operations::ThreadSequenceOperation::start_res_

private

Referenced by start_res().

std::string protocols::toolbox::task_operations::ThreadSequenceOperation::target_sequence_

private

Referenced by apply(), and target_sequence().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/toolbox/task_operations/ThreadSequenceOperation.hh
• symlinks/rosetta/src/protocols/toolbox/task_operations/ThreadSequenceOperation.cc