#include <DisulfideEntropyFilter.hh>

Public Member Functions
	DisulfideEntropyFilter ()

	DisulfideEntropyFilter (core::Real tightness_, core::Real lower_bound_)

	DisulfideEntropyFilter (DisulfideEntropyFilter const &src)

virtual	~DisulfideEntropyFilter ()

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

filters::FilterOP	clone () const

filters::FilterOP	fresh_instance () const

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Real	compute_residual (core::pose::Pose const &pose) const

core::Real	compute (core::pose::Pose const &pose) const

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &, moves::Movers_map const &, core::pose::Pose const &)

core::Real	lower_bound () const

void	lower_bound (core::Real value)

core::Real	tightness () const

void	tightness (core::Real value)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
core::Real	tightness_

core::Real	lower_bound_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::DisulfideEntropyFilter::DisulfideEntropyFilter ( )

References filters.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::DisulfideEntropyFilter::DisulfideEntropyFilter	(	core::Real	tightness_,
		core::Real	lower_bound_
	)

References filters.

protocols::simple_filters::DisulfideEntropyFilter::DisulfideEntropyFilter ( DisulfideEntropyFilter const & src )

References filters.

protocols::simple_filters::DisulfideEntropyFilter::~DisulfideEntropyFilter ( )

virtual

Member Function Documentation

bool protocols::simple_filters::DisulfideEntropyFilter::apply ( core::pose::Pose const & pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), core::conformation::Residue::is_bonded(), j, lower_bound_, core::pose::Pose::residue(), tightness_, core::pose::Pose::total_residue(), and protocols::simple_filters::TR.

filters::FilterOP protocols::simple_filters::DisulfideEntropyFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References DisulfideEntropyFilter().

core::Real protocols::simple_filters::DisulfideEntropyFilter::compute ( core::pose::Pose const & pose ) const

References protocols::simple_filters::determinant(), core::conformation::Residue::is_bonded(), j, log(), core::pose::Pose::residue(), and core::pose::Pose::total_residue().

Referenced by apply(), compute_residual(), report(), and report_sm().

core::Real protocols::simple_filters::DisulfideEntropyFilter::compute_residual ( core::pose::Pose const & pose ) const

References compute(), core::conformation::Residue::is_bonded(), j, core::pose::Pose::residue(), and core::pose::Pose::total_residue().

filters::FilterOP protocols::simple_filters::DisulfideEntropyFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References DisulfideEntropyFilter().

core::Real protocols::simple_filters::DisulfideEntropyFilter::lower_bound ( ) const

References lower_bound_.

Referenced by parse_my_tag().

void protocols::simple_filters::DisulfideEntropyFilter::lower_bound ( core::Real value )

References lower_bound_.

void protocols::simple_filters::DisulfideEntropyFilter::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	,
		filters::Filters_map const &	,
		moves::Movers_map const &	,
		core::pose::Pose const &
	)