AntibodyDatabaseManager.cc File Reference

Handles all loading of CDR, Framework, and cluster/dmap info from external database file. More...

#include <protocols/antibody/design/AntibodyDatabaseManager.hh>
#include <protocols/antibody/design/AntibodyGraftDesigner.hh>
#include <protocols/antibody/design/util.hh>
#include <protocols/antibody/AntibodyEnum.hh>
#include <protocols/antibody/clusters/CDRClusterEnum.hh>
#include <protocols/antibody/AntibodyInfo.hh>
#include <protocols/antibody/clusters/CDRClusterEnumManager.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Conformation.hh>
#include <core/chemical/AA.hh>
#include <utility/sql_database/DatabaseSessionManager.hh>
#include <protocols/features/ProteinSilentReport.hh>
#include <protocols/features/util.hh>
#include <basic/database/sql_utils.hh>
#include <boost/uuid/uuid.hpp>
#include <cppdb/frontend.h>
#include <basic/database/open.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <string>
#include <utility/file/FileName.hh>
#include <utility/string_util.hh>
#include <utility/PyAssert.hh>
#include <boost/algorithm/string.hpp>
#include <fstream>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody
	protocols::antibody::design

Typedefs
typedef std::map< CDRNameEnum, CDRGraftInstructions >	protocols::antibody::design::GraftInstructions
typedef std::map< CDRNameEnum, CDRDesignInstructions >	protocols::antibody::design::DesignInstructions
typedef std::map< CDRNameEnum, vector1< PoseOP > >	protocols::antibody::design::CDRSet
typedef std::map< CDRNameEnum, vector1< CDRClusterEnum > >	protocols::antibody::design::CDRClusterMap
typedef std::map< CDRNameEnum, vector1< std::string > >	protocols::antibody::design::PDBMap

Variables
static basic::Tracer	TR ("antibody.design.AntibodyDatabaseManager")

Detailed Description

Handles all loading of CDR, Framework, and cluster/dmap info from external database file.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Variable Documentation

basic::Tracer TR("antibody.design.AntibodyDatabaseManager")

static