| add_fragments(core::fragment::FragSetOP fragset) | protocols::loops::loop_mover::LoopMover | |
| apply(core::pose::Pose &pose) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| clear_fragments() | protocols::loops::loop_mover::LoopMover | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | virtual |
| create() | protocols::moves::Mover | virtual |
| enforce_false_movemap(MoveMapOP &mm) const | protocols::loops::loop_mover::LoopMover | protected |
| false_movemap() const | protocols::loops::loop_mover::LoopMover | |
| false_movemap(MoveMapOP const &mm) | protocols::loops::loop_mover::LoopMover | |
| Filters_map typedef | protocols::moves::Mover | |
| fix_natsc_ | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | private |
| flank_residue_min_ | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | private |
| frag_libs() const | protocols::loops::loop_mover::LoopMover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_checkpoints() | protocols::loops::loop_mover::LoopMover | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_redesign_loop() | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | inline |
| get_task_factory() | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init(core::scoring::ScoreFunctionCOP scorefxn) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| LoopMover() | protocols::loops::loop_mover::LoopMover | |
| LoopMover(protocols::loops::LoopsOP loops_in) | protocols::loops::loop_mover::LoopMover | |
| LoopMover(protocols::loops::LoopsFileData const &loops_from_file) | protocols::loops::loop_mover::LoopMover | |
| LoopMover(protocols::loops::GuardedLoopsFromFileOP guarded_loops) | protocols::loops::loop_mover::LoopMover | |
| LoopMover(LoopMover const &rhs) | protocols::loops::loop_mover::LoopMover | |
| LoopMover_Refine_KIC() | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| LoopMover_Refine_KIC(protocols::loops::LoopsOP loops_in) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| LoopMover_Refine_KIC(protocols::loops::LoopsOP const loops_in, core::scoring::ScoreFunctionCOP scorefxn) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| loops(protocols::loops::LoopsOP lptr) | protocols::loops::loop_mover::LoopMover | |
| loops(LoopsFileData const &loop_file_data) | protocols::loops::loop_mover::LoopMover | |
| loops(protocols::loops::GuardedLoopsFromFileOP guarded_loops) | protocols::loops::loop_mover::LoopMover | |
| loops() const | protocols::loops::loop_mover::LoopMover | |
| loops() | protocols::loops::loop_mover::LoopMover | |
| max_seglen_ | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | private |
| min_after_repack_ | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | private |
| MoveMapOP typedef | protocols::loops::loop_mover::LoopMover | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| neighbor_dist_ | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | private |
| operator=(LoopMover const &rhs) | protocols::loops::loop_mover::LoopMover | |
| protocols::moves::Mover::operator=(Mover const &other) | protocols::moves::Mover | |
| optimize_only_kic_region_sidechains_after_move_ | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| recover_low_ | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | private |
| redesign_loop_ | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | protected |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| resolve_loop_indices(core::pose::Pose const &p) | protocols::loops::loop_mover::LoopMover | protected |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn() const | protocols::loops::loop_mover::LoopMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_default_settings() | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| set_extended_torsions(core::pose::Pose &pose, Loop const &loop) | protocols::loops::loop_mover::LoopMover | virtual |
| set_flank_residue_min(bool value) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | inline |
| set_guarded_loops_not_in_charge() | protocols::loops::loop_mover::LoopMover | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_loops_from_pose_observer_cache(core::pose::Pose const &pose) | protocols::loops::loop_mover::LoopMover | protected |
| set_movemap_from_kic_segment(core::pose::Pose &pose, core::kinematics::MoveMap &cur_mm, Size kic_start, Size kic_end) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_redesign_loop(bool value=true) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | inline |
| set_rottrials_from_kic_segment(core::pose::Pose &pose, core::pack::task::PackerTaskOP &rottrials_packer_task, Size kic_start, Size kic_end) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| set_scorefxn(const core::scoring::ScoreFunctionOP score_in) | protocols::loops::loop_mover::LoopMover | |
| set_task_factory(core::pack::task::TaskFactoryOP value) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| set_use_loops_from_observer_cache(bool const loops_from_observer_cache) | protocols::loops::loop_mover::LoopMover | protected |
| show(std::ostream &output=std::cout) const | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| task_factory | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | protected |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| torsion_features_string(core::pose::Pose const &pose) const | protocols::loops::loop_mover::LoopMover | |
| tr() const | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | protectedvirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| update_allow_sc_vectors(core::pose::Pose &pose, utility::vector1< utility::vector1< bool > > &allow_sc_vectors) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| update_movemap_vectors(core::pose::Pose &pose, utility::vector1< core::kinematics::MoveMap > &move_maps) | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| use_loops_from_observer_cache() const | protocols::loops::loop_mover::LoopMover | protected |
| ~LoopMover() | protocols::loops::loop_mover::LoopMover | virtual |
| ~LoopMover_Refine_KIC() | protocols::loops::loop_mover::refine::LoopMover_Refine_KIC | |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7