protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler Member List

This is the complete list of members for protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler, including all inherited members.

actually_moving_res_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
apply(core::pose::Pose &pose_to_visualize)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	virtual
protocols::moves::MoverForPoseList::apply(utility::vector1< core::pose::PoseOP > &pose_list)	protocols::moves::MoverForPoseList	virtual
protocols::moves::MoverForPoseList::apply(utility::vector1< core::pose::PoseOP > &pose_list, core::pose::Pose &viewer_pose)	protocols::moves::MoverForPoseList	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
apply_bulge_variant(core::pose::Pose &pose) const	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
atom_atom_overlap_dist_cutoff_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
atr_rep_checker_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
base_centroid_checker_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
bin_size_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
break_early_for_integration_tests()	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
build_pose_from_scratch_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
bulge_variant_decision(core::pose::Pose &pose, Real const &delta_atr_score)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
chain_closable_geometry_checker_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
chain_closure_checker_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
close_chain_to_distal_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
count_data_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
create()	protocols::moves::Mover	virtual
extra_tag_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
Filters_map typedef	protocols::moves::Mover
five_prime_chain_break_res_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
fresh_instance() const	protocols::moves::Mover	virtual
gap_size_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	virtual
get_native_pose() const	protocols::moves::Mover
get_num_pose_kept()	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
initialize_poses_and_checkers(core::pose::Pose &pose)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
is_dinucleotide_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
is_internal_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
is_prepend_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
job_parameters_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
kic_sampling_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
last_append_res_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
last_prepend_res_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
MoverForPoseList()	protocols::moves::MoverForPoseList
moving_res_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
moving_suite_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
name()	protocols::moves::Mover	inlinestatic
native_rmsd_screen_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
num_nucleotides_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
o2prime_packer_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
operator=(Mover const &other)	protocols::moves::Mover
options_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
output_count_data()	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
phosphate_sampler_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
Pose typedef	protocols::moves::Mover
pose_list()	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler
pose_list_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
pose_selection_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
PoseCOP typedef	protocols::moves::Mover
rebuild_bulge_mode_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
rotamer_sampler_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
save_state(SerializableState &state)	protocols::moves::Mover	virtual
scorefxn_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
screening_pose_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
set_base_centroid_checker(checker::RNA_BaseCentroidCheckerOP &checker)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_extra_tag(std::string const setting)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_options(StepWiseRNA_ModelerOptionsCOP options)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler
set_pose_list(utility::vector1< PoseOP > &pose_list)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler
set_rebuild_bulge_mode(bool const &setting)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	inline
set_scorefxn(core::scoring::ScoreFunctionOP const &scorefxn)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler
set_silent_file(std::string const &setting)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	inline
set_user_input_VDW_bin_checker(checker::RNA_VDW_BinCheckerOP const &user_input_VDW_bin_checker)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
silent_file_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
StepWiseRNA_ClassicResidueSampler(StepWiseRNA_JobParametersCOP &job_parameters_)	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
user_input_VDW_bin_checker_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
working_moving_partition_pos_	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler	private
~Mover()	protocols::moves::Mover	virtual
~MoverForPoseList()	protocols::moves::MoverForPoseList
~StepWiseRNA_ClassicResidueSampler()	protocols::stepwise::sampling::rna::legacy::suite::StepWiseRNA_ClassicResidueSampler