protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener Class Reference

#include <ChainClosableGeometryStubBasedScreener.hh>

Public Member Functions
	ChainClosableGeometryStubBasedScreener (sampling::rna::checker::ChainClosableGeometryCheckerOP chain_closable_geometry_checker, utility::vector1< core::pose::PoseOP > screening_pose_list, core::kinematics::Stub const &moving_res_base_stub, Size const reference_res, utility::vector1< core::conformation::ResidueOP > moving_rsd_at_origin_list, bool const using_predefined_moving_rsd_list=true)
	ChainClosableGeometryStubBasedScreener (sampling::rna::checker::ChainClosableGeometryCheckerOP chain_closable_geometry_checker, utility::vector1< core::pose::PoseOP > screening_pose_list, core::kinematics::Stub const &moving_res_base_stub, Size const chain_break_reference_res)
	~ChainClosableGeometryStubBasedScreener ()
void	get_update (rotamer_sampler::RotamerBaseOP sampler)
bool	check_screen ()
std::string	name () const
StepWiseScreenerType	type () const
Public Member Functions inherited from protocols::stepwise::screener::StepWiseResiduePairScreener
	StepWiseResiduePairScreener (Size const res1, Size const res2)
	~StepWiseResiduePairScreener ()
void	fast_forward (rotamer_sampler::RotamerBaseOP sampler)
Public Member Functions inherited from protocols::stepwise::screener::StepWiseScreener
	StepWiseScreener ()
	~StepWiseScreener ()
virtual void	apply_mover (moves::CompositionMoverOP, Size const, Size const )
virtual void	add_mover (moves::CompositionMoverOP update_mover, moves::CompositionMoverOP restore_mover)
Size const &	count () const
void	increment_count ()
void	reset ()
void	set_ok_to_increment (bool const setting)

Private Attributes
sampling::rna::checker::ChainClosableGeometryCheckerOP	chain_closable_geometry_checker_
utility::vector1 < core::pose::PoseOP >	screening_pose_list_
core::conformation::ResidueOP	moving_rsd_at_origin_
utility::vector1 < core::conformation::ResidueOP >	moving_rsd_at_origin_list_
core::kinematics::Stub const &	moving_res_base_stub_
Size const	reference_res_
bool const	using_predefined_moving_rsd_list_

Additional Inherited Members
Protected Attributes inherited from protocols::stepwise::screener::StepWiseResiduePairScreener
Size const	res1_
Size const	res2_

Constructor & Destructor Documentation

protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::ChainClosableGeometryStubBasedScreener	(	sampling::rna::checker::ChainClosableGeometryCheckerOP	chain_closable_geometry_checker,
		utility::vector1< core::pose::PoseOP >	screening_pose_list,
		core::kinematics::Stub const &	moving_res_base_stub,
		Size const	reference_res,
		utility::vector1< core::conformation::ResidueOP >	moving_rsd_at_origin_list,
		bool const	using_predefined_moving_rsd_list = true
	)

protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::ChainClosableGeometryStubBasedScreener	(	sampling::rna::checker::ChainClosableGeometryCheckerOP	chain_closable_geometry_checker,
		utility::vector1< core::pose::PoseOP >	screening_pose_list,
		core::kinematics::Stub const &	moving_res_base_stub,
		Size const	chain_break_reference_res
	)

protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::~ChainClosableGeometryStubBasedScreener

(

)

Member Function Documentation

bool protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::check_screen ( )

virtual

Reimplemented from protocols::stepwise::screener::StepWiseScreener.

References chain_closable_geometry_checker_, protocols::stepwise::sampling::rna::checker::ChainClosableGeometryChecker::check_screen(), utility::tools::make_vector1(), moving_res_base_stub_, moving_rsd_at_origin_, moving_rsd_at_origin_list_, reference_res_, screening_pose_list_, and using_predefined_moving_rsd_list_.

void protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::get_update ( rotamer_sampler::RotamerBaseOP  sampler )

virtual

Reimplemented from protocols::stepwise::screener::StepWiseScreener.

References utility::pointer::owning_ptr< T >::get(), moving_rsd_at_origin_, protocols::rotamer_sampler::RESIDUE_LIST, protocols::rotamer_sampler::RIGID_BODY_WITH_RESIDUE_ALTERNATIVES, protocols::rotamer_sampler::RIGID_BODY_WITH_RESIDUE_LIST, runtime_assert, and protocols::rotamer_sampler::RotamerBase::type().

std::string protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::name ( ) const

inlinevirtual

Implements protocols::stepwise::screener::StepWiseResiduePairScreener.

StepWiseScreenerType protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::type ( ) const

inlinevirtual

Implements protocols::stepwise::screener::StepWiseResiduePairScreener.

References protocols::stepwise::screener::CHAIN_CLOSABLE_GEOMETRY_STUB_BASED.

Member Data Documentation

sampling::rna::checker::ChainClosableGeometryCheckerOP protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::chain_closable_geometry_checker_

private

Referenced by check_screen().

core::kinematics::Stub const& protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::moving_res_base_stub_

private

Referenced by check_screen().

core::conformation::ResidueOP protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::moving_rsd_at_origin_

private

Referenced by check_screen(), and get_update().

utility::vector1< core::conformation::ResidueOP > protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::moving_rsd_at_origin_list_

private

Referenced by check_screen().

Size const protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::reference_res_

private

Referenced by check_screen().

utility::vector1< core::pose::PoseOP > protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::screening_pose_list_

private

Referenced by check_screen().

bool const protocols::stepwise::screener::ChainClosableGeometryStubBasedScreener::using_predefined_moving_rsd_list_

private

Referenced by check_screen().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/stepwise/screener/ChainClosableGeometryStubBasedScreener.hh
• symlinks/rosetta/src/protocols/stepwise/screener/ChainClosableGeometryStubBasedScreener.cc