| add_inner_cycle_step(LoopRefineInnerCycleOP inner_cycle_step) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | |
| apply(Pose &) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| create() | protocols::moves::Mover | virtual |
| debug() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_one_random_loop() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | protected |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | private |
| init_for_equal_operator_and_copy_constructor(LoopRefineInnerCycleContainer &lhs, LoopRefineInnerCycleContainer const &rhs) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | private |
| init_options() | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | private |
| inner_cycle_list_ | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | private |
| inner_cycle_steps_ | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | private |
| InnerCycleList typedef | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| loop_mover() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | |
| LoopRefineInnerCycle() | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | |
| LoopRefineInnerCycle(LoopRefineInnerCycle const &rhs) | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | |
| LoopRefineInnerCycle(LoopMover_Refine_CCDAP loop_mover, moves::MonteCarloOP mc, core::scoring::ScoreFunctionOP scorefxn, core::pack::task::TaskFactoryOP tf) | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | |
| LoopRefineInnerCycleContainer() | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | |
| LoopRefineInnerCycleContainer(LoopRefineInnerCycleContainer const &rhs) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | |
| mc() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | |
| movemap() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | protected |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| operator<<(std::ostream &out, LoopRefineInnerCycleContainer const &loop_refine_inner_cycle_container) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | friend |
| operator=(LoopRefineInnerCycleContainer const &rhs) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | |
| protocols::loops::loop_mover::refine::LoopRefineInnerCycle::operator=(LoopRefineInnerCycle const &rhs) | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | |
| protocols::moves::Mover::operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | static |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_debug(bool debug) | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_loop_mover(LoopMover_Refine_CCDAP new_owner_in_town) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| set_mc(moves::MonteCarloOP mc) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| set_movemap(core::kinematics::MoveMapOP movemap) | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | protected |
| set_native_pose(PoseCOP pose) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| set_scorefxn(core::scoring::ScoreFunctionOP scorefxn) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| set_task_factory(core::pack::task::TaskFactoryOP tf) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| setup_objects(Pose const &pose) | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | private |
| show(std::ostream &out=std::cout) const | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| task_factory() const | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~LoopRefineInnerCycle() | protocols::loops::loop_mover::refine::LoopRefineInnerCycle | virtual |
| ~LoopRefineInnerCycleContainer() | protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer | virtual |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7