#include <MultiStateFitnessFunction.hh>

Public Types
typedef utility::pointer::owning_ptr < MultiStateFitnessFunction >	OP

Public Types inherited from protocols::genetic_algorithm::FitnessFunction
typedef utility::pointer::owning_ptr < FitnessFunction >	OP

typedef utility::pointer::owning_ptr < FitnessFunction const >	COP

Public Member Functions
	MultiStateFitnessFunction ()

virtual	~MultiStateFitnessFunction ()

virtual void	add_state (SingleStateOP state)

virtual void	add_state (core::pose::Pose const &pose, bool is_positive)

virtual core::Real	evaluate (protocols::genetic_algorithm::Entity &entity)

virtual core::Real	evaluate (protocols::genetic_algorithm::Entity &entity, core::Size single_state_num)=0

virtual core::Real	evaluate_positive_states (protocols::genetic_algorithm::Entity &entity)

virtual void	set_aggregate_function (MultiStateAggregateFunction::COP aggregate_function)

virtual MultiStateAggregateFunction::COP	aggregate_function () const

virtual void	set_scorefxn (core::scoring::ScoreFunctionCOP sf)

virtual core::scoring::ScoreFunctionCOP	scorefxn () const

virtual SingleStateCOPs	const_states (bool positive_only=false) const
	true const (read only) access to states More...

virtual SingleStateCOPs	positive_states () const

virtual core::Size	num_states () const

virtual core::Size	num_states (bool pos_neg) const

virtual core::Size	num_positive_states () const

virtual core::Size	num_negative_states () const

virtual void	add_metric_value_getter (std::string const &name, protocols::toolbox::pose_metric_calculators::MetricValueGetter const &metric_value_getter)

Public Member Functions inherited from protocols::genetic_algorithm::FitnessFunction
virtual	~FitnessFunction ()

Protected Types
typedef std::map< std::string, protocols::toolbox::pose_metric_calculators::MetricValueGetter >	MetricValueGetterMap

Protected Member Functions
virtual SingleStateOPs &	states ()

MetricValueGetterMap const &	metric_value_getters () const

Private Attributes
SingleStateOPs	states_

MultiStateAggregateFunction::COP	aggregate_function_

core::scoring::ScoreFunctionCOP	scorefxn_

utility::vector1 < core::pose::PoseOP >	best_entity_positive_states_

core::Real	best_fitness_

MetricValueGetterMap	metric_value_getters_

Member Typedef Documentation

typedef std::map<std::string, protocols::toolbox::pose_metric_calculators::MetricValueGetter> protocols::multistate_design::MultiStateFitnessFunction::MetricValueGetterMap

protected

typedef utility::pointer::owning_ptr< MultiStateFitnessFunction > protocols::multistate_design::MultiStateFitnessFunction::OP

Constructor & Destructor Documentation

protocols::multistate_design::MultiStateFitnessFunction::MultiStateFitnessFunction ( )

protocols::multistate_design::MultiStateFitnessFunction::~MultiStateFitnessFunction ( )

virtual

Member Function Documentation

void protocols::multistate_design::MultiStateFitnessFunction::add_metric_value_getter	(	std::string const &	name,
		protocols::toolbox::pose_metric_calculators::MetricValueGetter const &	metric_value_getter
	)

virtual

References metric_value_getters_.

void protocols::multistate_design::MultiStateFitnessFunction::add_state ( SingleStateOP state )

virtual

References best_entity_positive_states_, and states_.

Referenced by add_state().

void protocols::multistate_design::MultiStateFitnessFunction::add_state	(	core::pose::Pose const &	pose,
		bool	is_positive
	)

virtual

References add_state().

MultiStateAggregateFunction::COP protocols::multistate_design::MultiStateFitnessFunction::aggregate_function ( ) const

virtual

References aggregate_function_.

Referenced by set_aggregate_function().

SingleStateCOPs protocols::multistate_design::MultiStateFitnessFunction::const_states ( bool positive_only = false ) const

virtual

true const (read only) access to states

References end, s, and states_.

Referenced by protocols::multistate_design::MultiStateAggregateFunction::evaluate(), protocols::multistate_design::PartitionAggregateFunction< T >::evaluate(), and positive_states().

core::Real protocols::multistate_design::MultiStateFitnessFunction::evaluate ( protocols::genetic_algorithm::Entity & entity )

virtual

Implements protocols::genetic_algorithm::FitnessFunction.

References aggregate_function_, best_entity_positive_states_, best_fitness_, end, runtime_assert, s, protocols::genetic_algorithm::Entity::set_fitness(), protocols::multistate_design::MultiStateEntity< T >::single_state_entity_data(), size(), states(), and states_.

Referenced by evaluate_positive_states().

virtual core::Real protocols::multistate_design::MultiStateFitnessFunction::evaluate	(	protocols::genetic_algorithm::Entity &	entity,
		core::Size	single_state_num
	)

pure virtual

Implemented in protocols::multistate_design::MultiStatePacker.

core::Real protocols::multistate_design::MultiStateFitnessFunction::evaluate_positive_states ( protocols::genetic_algorithm::Entity & entity )

virtual

References end, evaluate(), s, and states_.

std::map< std::string, protocols::toolbox::pose_metric_calculators::MetricValueGetter > const & protocols::multistate_design::MultiStateFitnessFunction::metric_value_getters ( ) const

protected

References metric_value_getters_.

Referenced by protocols::multistate_design::MultiStatePacker::evaluate().

virtual core::Size protocols::multistate_design::MultiStateFitnessFunction::num_negative_states ( ) const

inlinevirtual

References num_states().

virtual core::Size protocols::multistate_design::MultiStateFitnessFunction::num_positive_states ( ) const

inlinevirtual

References num_states().

virtual core::Size protocols::multistate_design::MultiStateFitnessFunction::num_states ( ) const

inlinevirtual

References states_.

Referenced by num_negative_states(), and num_positive_states().

core::Size protocols::multistate_design::MultiStateFitnessFunction::num_states ( bool pos_neg ) const

virtual

References end, s, and states_.

SingleStateCOPs protocols::multistate_design::MultiStateFitnessFunction::positive_states ( ) const

virtual

References const_states().

core::scoring::ScoreFunctionCOP protocols::multistate_design::MultiStateFitnessFunction::scorefxn ( ) const

virtual

References scorefxn_.

Referenced by protocols::multistate_design::MultiStatePacker::evaluate(), and protocols::multistate_design::MultiStatePacker::single_state_design().

void protocols::multistate_design::MultiStateFitnessFunction::set_aggregate_function ( MultiStateAggregateFunction::COP aggregate_function )

virtual

References aggregate_function(), and aggregate_function_.

void protocols::multistate_design::MultiStateFitnessFunction::set_scorefxn ( core::scoring::ScoreFunctionCOP sf )

virtual

References scorefxn_.

SingleStateOPs & protocols::multistate_design::MultiStateFitnessFunction::states ( )

protectedvirtual

References states_.

Referenced by evaluate(), protocols::multistate_design::MultiStatePacker::evaluate(), and protocols::multistate_design::MultiStatePacker::single_state_design().

Member Data Documentation

MultiStateAggregateFunction::COP protocols::multistate_design::MultiStateFitnessFunction::aggregate_function_

private

Referenced by aggregate_function(), evaluate(), and set_aggregate_function().

utility::vector1< core::pose::PoseOP > protocols::multistate_design::MultiStateFitnessFunction::best_entity_positive_states_

private

Referenced by add_state(), and evaluate().

core::Real protocols::multistate_design::MultiStateFitnessFunction::best_fitness_

private

Referenced by evaluate().

MetricValueGetterMap protocols::multistate_design::MultiStateFitnessFunction::metric_value_getters_

private

Referenced by add_metric_value_getter(), and metric_value_getters().

core::scoring::ScoreFunctionCOP protocols::multistate_design::MultiStateFitnessFunction::scorefxn_

private

Referenced by scorefxn(), and set_scorefxn().

SingleStateOPs protocols::multistate_design::MultiStateFitnessFunction::states_

private

Referenced by add_state(), const_states(), evaluate(), evaluate_positive_states(), num_states(), and states().

The documentation for this class was generated from the following files:

symlinks/rosetta/src/protocols/multistate_design/MultiStateFitnessFunction.hh
symlinks/rosetta/src/protocols/multistate_design/MultiStateFitnessFunction.cc

Public Types

Public Member Functions

Protected Types

Protected Member Functions

Private Attributes

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation