protocols::surface_docking::SurfaceDockingProtocol Member List

This is the complete list of members for protocols::surface_docking::SurfaceDockingProtocol, including all inherited members.

abinitio_	protocols::surface_docking::SurfaceDockingProtocol	private
apply(core::pose::Pose &pose)	protocols::surface_docking::SurfaceDockingProtocol	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
calc_secondary_structure(core::pose::Pose &pose)	protocols::surface_docking::SurfaceDockingProtocol	private
calc_secondary_structure_with_surface(core::pose::Pose const &pose)	protocols::surface_docking::SurfaceDockingProtocol	private
centroid_relax_	protocols::surface_docking::SurfaceDockingProtocol	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::surface_docking::SurfaceDockingProtocol	virtual
copy_data(SurfaceDockingProtocol object_to_copy_to, SurfaceDockingProtocol object_to_copy_from)	protocols::surface_docking::SurfaceDockingProtocol	private
create()	protocols::moves::Mover	virtual
create_surface_packer_task(core::pose::Pose const &pose, Size const first_protein_residue)	protocols::surface_docking::SurfaceDockingProtocol	private
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::surface_docking::SurfaceDockingProtocol	virtual
fullatom_relax_	protocols::surface_docking::SurfaceDockingProtocol	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::surface_docking::SurfaceDockingProtocol	virtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init()	protocols::surface_docking::SurfaceDockingProtocol	private
initialize_surface_energies(core::pose::Pose &pose, Size first_protein_residue)	protocols::surface_docking::SurfaceDockingProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
merge_protein_surface_poses(core::pose::Pose &pose, core::pose::Pose const &surface, core::pose::Pose const &protein)	protocols::surface_docking::SurfaceDockingProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
operator=(Mover const &other)	protocols::moves::Mover
pack_rotamers_fullatom_	protocols::surface_docking::SurfaceDockingProtocol	private
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
position_above_surface_	protocols::surface_docking::SurfaceDockingProtocol	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
save_state(SerializableState &state)	protocols::moves::Mover	virtual
score_sidechain_pack_	protocols::surface_docking::SurfaceDockingProtocol	private
sec_struct_	protocols::surface_docking::SurfaceDockingProtocol	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_secondary_structure(core::pose::Pose &pose)	protocols::surface_docking::SurfaceDockingProtocol	private
set_surface_parameters(core::pose::Pose &pose)	protocols::surface_docking::SurfaceDockingProtocol	private
setup_abinitio()	protocols::surface_docking::SurfaceDockingProtocol	private
setup_movers(core::pose::Pose const &pose, Size const first_protein_residue)	protocols::surface_docking::SurfaceDockingProtocol	private
setup_slide_movers(core::pose::Pose const &pose)	protocols::surface_docking::SurfaceDockingProtocol	private
show(std::ostream &ouput=std::cout) const	protocols::surface_docking::SurfaceDockingProtocol	virtual
slide_away_from_surface_	protocols::surface_docking::SurfaceDockingProtocol	private
slide_into_surface_	protocols::surface_docking::SurfaceDockingProtocol	private
split_protein_surface_poses(core::pose::Pose const &pose, core::pose::Pose &surface, core::pose::Pose &protein)	protocols::surface_docking::SurfaceDockingProtocol	private
Strings typedef	protocols::moves::Mover
surface_orient_	protocols::surface_docking::SurfaceDockingProtocol	private
surface_parameters_	protocols::surface_docking::SurfaceDockingProtocol	private
SurfaceDockingProtocol()	protocols::surface_docking::SurfaceDockingProtocol
SurfaceDockingProtocol(SurfaceDockingProtocol const &src)	protocols::surface_docking::SurfaceDockingProtocol
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
to_centroid_	protocols::surface_docking::SurfaceDockingProtocol	private
to_full_atom_	protocols::surface_docking::SurfaceDockingProtocol	private
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
valid_surface_pose(core::pose::Pose const &pose)	protocols::surface_docking::SurfaceDockingProtocol	private
~Mover()	protocols::moves::Mover	virtual
~SurfaceDockingProtocol()	protocols::surface_docking::SurfaceDockingProtocol