| ab_info_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| AntibodyCDRDesigner(AntibodyInfoOP ab_info) | protocols::antibody::design::AntibodyCDRDesigner | |
| AntibodyCDRDesigner(AntibodyInfoOP ab_info, std::string instruction_path) | protocols::antibody::design::AntibodyCDRDesigner | |
| apply(core::pose::Pose &pose) | protocols::antibody::design::AntibodyCDRDesigner | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| basic_design_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| cdr_has_constraints(core::pose::Pose const &pose, CDRNameEnum const cdr, std::string const constraint_type) | protocols::antibody::design::AntibodyCDRDesigner | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| design_method_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| disable_design_cdr(CDRNameEnum cdr, core::pack::task::TaskFactoryOP tf, core::pose::Pose &pose) | protocols::antibody::design::AntibodyCDRDesigner | private |
| disable_design_cdrs(core::pack::task::TaskFactoryOP tf, core::pose::Pose &pose) | protocols::antibody::design::AntibodyCDRDesigner | private |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_conservative_design_residues(core::pose::Pose &pose) | protocols::antibody::design::AntibodyCDRDesigner | private |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::antibody::design::AntibodyCDRDesigner | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| instruction_path_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| instructions_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| neighbor_dis_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| no_design_proline(bool const setting) | protocols::antibody::design::AntibodyCDRDesigner | |
| no_design_proline_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| prob_cutoff_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| read_command_line_options() | protocols::antibody::design::AntibodyCDRDesigner | private |
| read_instructions(std::string instruction_path) | protocols::antibody::design::AntibodyCDRDesigner | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| remove_conservative_design_residues_from_prob_set(vector1< core::Size > const &positions, std::map< core::Size, std::map< core::chemical::AA, core::Real > > &prob_set) | protocols::antibody::design::AntibodyCDRDesigner | private |
| reset_status() | protocols::moves::Mover | |
| rounds_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| set_basic_design(bool const setting) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_cdr(CDRNameEnum const cdr, const bool setting) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_cdr_only(CDRNameEnum const cdr, bool const setting) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_cdr_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool const setting) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_design_method(DesignTypeEnum const design_method) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_neighbor_detection_dis(core::Real const neighbor_distance) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_probability_data_cutoff(core::Size const cutoff) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_rounds(core::Size const rounds) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_scorefxn(core::scoring::ScoreFunctionCOP scorefxn) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_use_cluster_constraints(bool const setting) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_use_conservative_design(CDRNameEnum const cdr, bool const setting) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_use_conservative_design_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool const setting) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_use_turn_conservation(bool const setting) | protocols::antibody::design::AntibodyCDRDesigner | |
| set_zero_prob_weight_at(core::Real const weight) | protocols::antibody::design::AntibodyCDRDesigner | |
| setup_constraints(core::pose::Pose &pose) | protocols::antibody::design::AntibodyCDRDesigner | private |
| setup_probability_data(core::pose::Pose &pose) | protocols::antibody::design::AntibodyCDRDesigner | private |
| setup_task_factory(core::pose::Pose &pose) | protocols::antibody::design::AntibodyCDRDesigner | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| turn_conservation_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| use_cluster_constraints_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| zero_prob_weight_ | protocols::antibody::design::AntibodyCDRDesigner | private |
| ~AntibodyCDRDesigner() | protocols::antibody::design::AntibodyCDRDesigner | virtual |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7