| anchor_sugar_modeling_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| apply(core::pose::Pose &pose_to_visualize) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | virtual |
| protocols::moves::MoverForPoseList::apply(utility::vector1< core::pose::PoseOP > &pose_list) | protocols::moves::MoverForPoseList | virtual |
| protocols::moves::MoverForPoseList::apply(utility::vector1< core::pose::PoseOP > &pose_list, core::pose::Pose &viewer_pose) | protocols::moves::MoverForPoseList | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| atr_rep_checker_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| atr_rep_checker_with_instantiated_sugar_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| atr_rep_checkers_for_anchor_sugar_models_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| base_bin_map_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| base_centroid_checker_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| break_early_for_integration_tests() | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| centroid_bin_max_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| centroid_bin_min_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| centroid_bin_size_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| chain_break_reference_res_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| chain_break_to_anchor_checker_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| chain_break_to_distal_checker_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| chain_closable_geometry_to_anchor_checker_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| chain_closable_geometry_to_distal_checker_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| check_moving_sugar(core::pose::Pose &pose) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| close_chain_to_anchor_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| close_chain_to_distal_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| count_data_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| create() | protocols::moves::Mover | virtual |
| euler_angle_bin_max_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| euler_angle_bin_min_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| euler_angle_bin_size_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| euler_z_bin_max_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| euler_z_bin_min_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| euler_z_bin_size_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| Filters_map typedef | protocols::moves::Mover | |
| five_prime_chain_break_res_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| floating_base_five_prime_chain_break_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| floating_base_three_prime_chain_break_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| gap_size_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| gap_size_to_anchor_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_pose_list() | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | |
| get_reference_stub(core::pose::Pose const &pose) const | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_euler_angle_grid_parameters() | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| initialize_other_residues_base_list(core::pose::Pose const &pose) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| initialize_poses_and_stubs_and_checkers(core::pose::Pose &pose) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| initialize_rigid_body_sampler(core::pose::Pose const &pose) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| initialize_xyz_grid_parameters() | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| instantiate_moving_sugar_and_o2prime(core::pose::Pose &pose) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| is_dinucleotide_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| is_internal_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| is_prepend_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| job_parameters_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| max_distance_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| max_distance_squared_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| max_ntries_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| MoverForPoseList() | protocols::moves::MoverForPoseList | |
| moving_res_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| moving_rsd_at_origin_list_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| moving_suite_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| name() | protocols::moves::Mover | inlinestatic |
| native_rmsd_screen_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| num_pose_kept_to_use_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| o2prime_instantiation_distance_cutoff_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| o2prime_packer_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| options_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| other_residues_base_list_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| output_count_data() | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| phosphate_sampler_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| Pose typedef | protocols::moves::Mover | |
| pose_list_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| pose_selection_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| PoseCOP typedef | protocols::moves::Mover | |
| reference_res_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| reference_stub_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reinstantiate_backbone_and_add_constraint_at_moving_res(core::pose::Pose &pose, core::Size const &five_prime_chain_break_res) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| reset_status() | protocols::moves::Mover | |
| sampler_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| screen_anchor_sugar_conformation(core::pose::Pose &pose, std::string &tag) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| screening_moving_rsd_at_origin_list_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| screening_pose_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| set_anchor_sugar_modeling(sugar::SugarModeling const &anchor_sugar_modeling) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | |
| set_base_centroid_checker(checker::RNA_BaseCentroidCheckerOP &checker) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_options(StepWiseRNA_ModelerOptionsCOP options) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | |
| set_scorefxn(core::scoring::ScoreFunctionOP const &scorefxn) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | |
| set_silent_file(std::string const &setting) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | inline |
| set_user_input_VDW_bin_checker(checker::RNA_VDW_BinCheckerOP const &user_input_VDW_bin_checker) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| silent_file_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| StepWiseRNA_FloatingBaseSampler(StepWiseRNA_JobParametersCOP &job_parameters_) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | |
| Strings typedef | protocols::moves::Mover | |
| sugar_screening_moving_rsd_at_origin_list_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| sugar_screening_pose_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| try_sugar_instantiation_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| update_base_bin_map(protocols::stepwise::sampling::rna::rigid_body::BaseBin const &base_bin) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| update_base_bin_map(utility::vector1< core::Real > const &rigid_body_values) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| user_input_VDW_bin_checker_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| VDW_bin_checker_ | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| virtualize_moving_sugar_and_o2prime(core::pose::Pose &pose) | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | private |
| ~Mover() | protocols::moves::Mover | virtual |
| ~MoverForPoseList() | protocols::moves::MoverForPoseList | |
| ~StepWiseRNA_FloatingBaseSampler() | protocols::stepwise::sampling::rna::legacy::rigid_body::StepWiseRNA_FloatingBaseSampler | |
1.8.7