| align_templates_to_pose_ | protocols::hybridization::CartesianHybridize | private |
| apply(core::pose::Pose &pose) | protocols::hybridization::CartesianHybridize | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| apply_frag(core::pose::Pose &pose, core::pose::Pose &templ, protocols::loops::Loop &frag, bool superpose=true) | protocols::hybridization::CartesianHybridize | protected |
| apply_frame(core::pose::Pose &pose, core::fragment::Frame &frame) | protocols::hybridization::CartesianHybridize | protected |
| bonds_scorefxn_ | protocols::hybridization::CartesianHybridize | private |
| CartesianHybridize() | protocols::hybridization::CartesianHybridize | |
| CartesianHybridize(utility::vector1< core::pose::PoseOP > const &templates_in, utility::vector1< core::Real > const &template_wts_in, utility::vector1< protocols::loops::Loops > const &template_chunks_in, utility::vector1< protocols::loops::Loops > const &template_contigs_in, core::fragment::FragSetOP fragments9_in) | protocols::hybridization::CartesianHybridize | |
| cartfrag_overlap_ | protocols::hybridization::CartesianHybridize | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::hybridization::CartesianHybridize | virtual |
| create() | protocols::moves::Mover | virtual |
| Filters_map typedef | protocols::moves::Mover | |
| fragments9_ | protocols::hybridization::CartesianHybridize | private |
| fresh_instance() const | protocols::hybridization::CartesianHybridize | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::hybridization::CartesianHybridize | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| hybridize_setup_ | protocols::hybridization::CartesianHybridize | private |
| increase_cycles_ | protocols::hybridization::CartesianHybridize | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() | protocols::hybridization::CartesianHybridize | |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| library_ | protocols::hybridization::CartesianHybridize | private |
| linmin_only_ | protocols::hybridization::CartesianHybridize | private |
| lowres_scorefxn_ | protocols::hybridization::CartesianHybridize | private |
| min_scorefxn_ | protocols::hybridization::CartesianHybridize | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| ncycles_ | protocols::hybridization::CartesianHybridize | private |
| no_global_frame_ | protocols::hybridization::CartesianHybridize | private |
| nocst_scorefxn_ | protocols::hybridization::CartesianHybridize | private |
| nofragbias_ | protocols::hybridization::CartesianHybridize | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(utility::tag::TagCOP, basic::datacache::DataMap &, Filters_map const &, Movers_map const &, Pose const &) | protocols::hybridization::CartesianHybridize | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| residue_sample_abinitio_ | protocols::hybridization::CartesianHybridize | private |
| residue_sample_template_ | protocols::hybridization::CartesianHybridize | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| seqfrags_only_ | protocols::hybridization::CartesianHybridize | private |
| set_cartfrag_overlap(core::Size cartfrag_overlap_in) | protocols::hybridization::CartesianHybridize | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_increase_cycles(core::Real increase_cycles_in) | protocols::hybridization::CartesianHybridize | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_linmin_only(bool linmin_only_in) | protocols::hybridization::CartesianHybridize | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_no_global_frame(bool no_global_frame_in) | protocols::hybridization::CartesianHybridize | inline |
| set_nofragbias(bool nofragbias_in) | protocols::hybridization::CartesianHybridize | inline |
| set_scorefunction(core::scoring::ScoreFunctionOP scorefxn_in) | protocols::hybridization::CartesianHybridize | |
| set_seqfrags_only(bool seqfrags_only_in) | protocols::hybridization::CartesianHybridize | inline |
| set_skip_long_min(bool skip_long_min_in) | protocols::hybridization::CartesianHybridize | inline |
| setup_for_parser() | protocols::hybridization::CartesianHybridize | |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| skip_long_min_ | protocols::hybridization::CartesianHybridize | private |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| template_contigs_ | protocols::hybridization::CartesianHybridize | private |
| template_wts_ | protocols::hybridization::CartesianHybridize | private |
| templates_ | protocols::hybridization::CartesianHybridize | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7