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Rosetta Protocols
2014.16.56682
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RDFEtableFunction computes fa_sol,fa_rep,fa_atr for a pair of atoms. More...
#include <StandardRDFFunctions.hh>
Public Member Functions | |
| RDFEtableFunction () | |
| virtual | ~RDFEtableFunction () |
| virtual void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data_map) |
| parse tags for RDFEtableFunction tag More... | |
| virtual RDFResultList | operator() (AtomPairData const &atom_data) |
| compute atr, rep and solvation energy for atom pair More... | |
Public Member Functions inherited from protocols::ligand_docking::rdf::RDFBase | |
| RDFBase (std::string const &name) | |
| virtual | ~RDFBase () |
| virtual void | preamble (core::pose::Pose &) |
| If you have code that needs to be run once per pose (for data caching, etc), put it here. More... | |
| void | add_function_name (std::string const &name) |
| add a function name to the list More... | |
| utility::vector1< std::string > | get_function_names () |
| get a list of all the function names which will be present in RDFResultList after operator() is called More... | |
Private Attributes | |
| core::scoring::etable::AnalyticEtableEvaluatorOP | etable_evaluator_ |
Additional Inherited Members | |
Public Types inherited from protocols::ligand_docking::rdf::RDFBase | |
| enum | FunctionSign { LigandPlusProteinMinus, LigandMinusProteinPlus, SameSign } |
| an enum of the possible states that a signed RDF can have More... | |
RDFEtableFunction computes fa_sol,fa_rep,fa_atr for a pair of atoms.
| protocols::ligand_docking::rdf::RDFEtableFunction::RDFEtableFunction | ( | ) |
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virtual |
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virtual |
compute atr, rep and solvation energy for atom pair
Implements protocols::ligand_docking::rdf::RDFBase.
References etable_evaluator_, protocols::ligand_docking::rdf::AtomPairData::ligand_atom, protocols::ligand_docking::rdf::AtomPairData::protein_atom, and weight.
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virtual |
parse tags for RDFEtableFunction tag
Implements protocols::ligand_docking::rdf::RDFBase.
References etable_evaluator_, basic::datacache::DataMap::get(), core::scoring::ScoringManager::get_instance(), and options.
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private |
Referenced by operator()(), and parse_my_tag().
1.8.7