#include <DynamicAggregateFunction.hh>

Public Member Functions
void	initialize_from_input_file (DaemonSetOP daemon_set, std::istream &input)

Public Member Functions inherited from protocols::pack_daemon::DynamicAggregateFunction
	DynamicAggregateFunction ()

virtual	~DynamicAggregateFunction ()

void	set_num_entity_elements (Size setting)

void	set_score_function (core::scoring::ScoreFunction const &sfxn)

core::Size	num_states () const

core::Size	num_npd_properties () const

core::Size	num_npd_properties_for_state (core::Size state_id) const

virtual core::Real	evaluate (StateEnergies const &, StateEnergies const &npd_properties, Entity const &)

virtual StateIndices	select_relevant_states (StateEnergies const &en, StateEnergies const &npd, Entity const &)

ExpressionCOP	variable_expression (numeric::expression_parser::ArithmeticASTValue const &) const

ExpressionCOP	function_expression (numeric::expression_parser::FunctionTokenCOP function, utility::vector1< ExpressionCOP > const &args) const

void	add_file_contents (std::string const &fname, std::string const &contents)
	Pair a file name with a string – instead of opening a file when asked to read this file, the DAF will use the contents of the file as provided. Useful for testing purposes. More...

std::string	state_name (Size state_index) const

StructureFileNames const &	file_inputs_for_job (int job_index) const

void	read_all_variables_from_input_file (std::istream &input)
	Initialize from an input stream without trying to communicate with remote nodes. More...

std::list< std::pair< Size, std::string > >::const_iterator	npd_variable_indices_for_state_begin (core::Size state_id) const

std::list< std::pair< Size, std::string > >::const_iterator	npd_variable_indices_for_state_end (core::Size state_id) const

Public Member Functions inherited from protocols::pack_daemon::MultistateAggregateFunction
	MultistateAggregateFunction ()

virtual	~MultistateAggregateFunction ()

Private Member Functions
void	initialize_pack_daemons (DaemonSetOP daemon_set)
	After the input stream has been read, assign the states to particular nodes and to the the pack daemon on this node. More...

void	distribute_jobs_to_remote_daemons (DaemonSetOP daemon_set)

void	assign_jobs_to_local_daemon_set (std::list< int > const &job_indices, DaemonSetOP daemon_set)

void	assign_jobs_to_remote_daemon_sets (int proc_id, std::list< int > const &job_indices)

bool	verify_remote_daemon_set_initialization_successful (int proc_id) const

void	send_success_message_to_remote_daemon_set (int proc_id) const

void	send_error_message_to_remote_daemon_sets () const

void	initialize_daemon_with_all_states (DaemonSetOP daemon_set)

Additional Inherited Members
Public Types inherited from protocols::pack_daemon::DynamicAggregateFunction
typedef MultistateAggregateFunction	parent

typedef protocols::genetic_algorithm::Entity	Entity

typedef numeric::expression_parser::Expression	Expression

typedef numeric::expression_parser::ExpressionOP	ExpressionOP

typedef numeric::expression_parser::ExpressionCOP	ExpressionCOP

typedef numeric::expression_parser::VariableExpression	VariableExpression

typedef numeric::expression_parser::VariableExpressionOP	VariableExpressionOP

typedef numeric::expression_parser::VariableExpressionCOP	VariableExpressionCOP

typedef numeric::expression_parser::ArithmeticASTExpressionOP	ArithmeticASTExpressionOP

typedef utility::vector1 < core::Real >	ExpressionValues

typedef core::Size	Size

Public Types inherited from protocols::pack_daemon::MultistateAggregateFunction
typedef utility::pointer::ReferenceCount	parent

typedef utility::vector1 < core::Real >	StateEnergies

typedef utility::vector1 < core::Size >	StateIndices

typedef protocols::genetic_algorithm::Entity	Entity

Protected Member Functions inherited from protocols::pack_daemon::DynamicAggregateFunction
void	count_file_reads ()

std::string	get_file_contents (std::string const &filename)

Member Function Documentation

void protocols::pack_daemon::DynamicAggregateFunctionDriver::assign_jobs_to_local_daemon_set	(	std::list< int > const &	job_indices,
		DaemonSetOP	daemon_set
	)

private

References protocols::pack_daemon::StructureFileNames::correspondence_file_name_, protocols::pack_daemon::DynamicAggregateFunction::file_inputs_for_job(), protocols::pack_daemon::DynamicAggregateFunction::get_file_contents(), protocols::pack_daemon::DynamicAggregateFunction::npd_variable_indices_for_state_begin(), protocols::pack_daemon::DynamicAggregateFunction::npd_variable_indices_for_state_end(), protocols::pack_daemon::StructureFileNames::pdb_name_, core::import_pose::pose_from_pdbstring(), and protocols::pack_daemon::StructureFileNames::resfile_name_.

Referenced by distribute_jobs_to_remote_daemons(), and initialize_daemon_with_all_states().

void protocols::pack_daemon::DynamicAggregateFunctionDriver::assign_jobs_to_remote_daemon_sets	(	int	proc_id,
		std::list< int > const &	job_indices
	)

private

Referenced by distribute_jobs_to_remote_daemons().

void protocols::pack_daemon::DynamicAggregateFunctionDriver::distribute_jobs_to_remote_daemons ( DaemonSetOP daemon_set )

private

References assign_jobs_to_local_daemon_set(), assign_jobs_to_remote_daemon_sets(), protocols::pack_daemon::error_message, utility::mpi_nprocs(), protocols::pack_daemon::DynamicAggregateFunction::num_states(), utility::receive_string_from_node(), send_error_message_to_remote_daemon_sets(), send_success_message_to_remote_daemon_set(), utility::to_string(), utility_exit_with_message, and verify_remote_daemon_set_initialization_successful().

Referenced by initialize_pack_daemons().

void protocols::pack_daemon::DynamicAggregateFunctionDriver::initialize_daemon_with_all_states ( DaemonSetOP daemon_set )

private

References assign_jobs_to_local_daemon_set(), and protocols::pack_daemon::DynamicAggregateFunction::num_states().

Referenced by initialize_pack_daemons().

void protocols::pack_daemon::DynamicAggregateFunctionDriver::initialize_from_input_file	(	DaemonSetOP	daemon_set,
		std::istream &	input
	)

References initialize_pack_daemons(), protocols::pack_daemon::DynamicAggregateFunction::read_all_variables_from_input_file(), and send_error_message_to_remote_daemon_sets().

void protocols::pack_daemon::DynamicAggregateFunctionDriver::initialize_pack_daemons ( DaemonSetOP daemon_set )

private

After the input stream has been read, assign the states to particular nodes and to the the pack daemon on this node.

References protocols::pack_daemon::DynamicAggregateFunction::count_file_reads(), distribute_jobs_to_remote_daemons(), and initialize_daemon_with_all_states().

Referenced by initialize_from_input_file().

void protocols::pack_daemon::DynamicAggregateFunctionDriver::send_error_message_to_remote_daemon_sets ( ) const

private

References protocols::pack_daemon::error_message, utility::mpi_nprocs(), and utility::send_integer_to_node().

Referenced by distribute_jobs_to_remote_daemons(), and initialize_from_input_file().

void protocols::pack_daemon::DynamicAggregateFunctionDriver::send_success_message_to_remote_daemon_set ( int proc_id ) const

private

References utility::send_integer_to_node(), and protocols::pack_daemon::success_message.

Referenced by distribute_jobs_to_remote_daemons().

bool protocols::pack_daemon::DynamicAggregateFunctionDriver::verify_remote_daemon_set_initialization_successful ( int proc_id ) const

private

References protocols::pack_daemon::error_message, utility::receive_integer_from_node(), protocols::pack_daemon::success_message, and utility::to_string().

Referenced by distribute_jobs_to_remote_daemons().

The documentation for this class was generated from the following files:

symlinks/rosetta/src/protocols/pack_daemon/DynamicAggregateFunction.hh
symlinks/rosetta/src/protocols/pack_daemon/DynamicAggregateFunction.cc

Public Member Functions

Private Member Functions

Additional Inherited Members

Member Function Documentation