| ab_info_ | protocols::antibody::GraftedStemOptimizer | private |
| apply(pose::Pose &pose) | protocols::antibody::GraftedStemOptimizer | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| benchmark_ | protocols::antibody::GraftedStemOptimizer | private |
| cdr_loop_ | protocols::antibody::GraftedStemOptimizer | private |
| cdr_name_ | protocols::antibody::GraftedStemOptimizer | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| deep_optimization_ | protocols::antibody::GraftedStemOptimizer | private |
| enable_benchmark_mode(bool const &setting) | protocols::antibody::GraftedStemOptimizer | inline |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_Cstem_foldtree(pose::Pose const &pose) const | protocols::antibody::GraftedStemOptimizer | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_N_C_stems_foldtree(pose::Pose const &pose) const | protocols::antibody::GraftedStemOptimizer | |
| get_name() const | protocols::antibody::GraftedStemOptimizer | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_Nstem_foldtree(pose::Pose const &pose) const | protocols::antibody::GraftedStemOptimizer | |
| get_stem_movemap(pose::Pose const &pose, std::string const &type, bool const &include_nb_sc=false) const | protocols::antibody::GraftedStemOptimizer | |
| get_stem_taskfactory(pose::Pose &pose, std::string const &type, bool const &include_nb_sc=false) const | protocols::antibody::GraftedStemOptimizer | |
| get_type() const | protocols::moves::Mover | inline |
| GraftedStemOptimizer(CDRNameEnum const &cdr_name, AntibodyInfoOP antibody_info) | protocols::antibody::GraftedStemOptimizer | |
| GraftedStemOptimizer(GraftedStemOptimizer const &rhs) | protocols::antibody::GraftedStemOptimizer | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() | protocols::antibody::GraftedStemOptimizer | private |
| initForEqualOperatorAndCopyConstructor(GraftedStemOptimizer &lhs, GraftedStemOptimizer const &rhs) | protocols::antibody::GraftedStemOptimizer | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| mc_ | protocols::antibody::GraftedStemOptimizer | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(GraftedStemOptimizer const &rhs) | protocols::antibody::GraftedStemOptimizer | |
| protocols::moves::Mover::operator=(Mover const &other) | protocols::moves::Mover | |
| optimize_stems_ | protocols::antibody::GraftedStemOptimizer | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::antibody::GraftedStemOptimizer | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_deep_optimization(bool const &setting) | protocols::antibody::GraftedStemOptimizer | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_scorefxn(core::scoring::ScoreFunctionOP setting) | protocols::antibody::GraftedStemOptimizer | |
| set_stem_size(Size const &setting) | protocols::antibody::GraftedStemOptimizer | |
| setup_protocol(pose::Pose &pose) | protocols::antibody::GraftedStemOptimizer | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| stem_size_ | protocols::antibody::GraftedStemOptimizer | mutableprivate |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~GraftedStemOptimizer() | protocols::antibody::GraftedStemOptimizer | |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7