| apply(core::pose::Pose &pose) | protocols::loophash::LoopHashLibrary | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| apply_random(core::pose::Pose &pose, core::Size &fir, core::Size &fjr, core::Real min_rms, core::Real max_rms) | protocols::loophash::LoopHashLibrary | |
| assigned_num_ | protocols::loophash::LoopHashLibrary | private |
| assigned_string_ | protocols::loophash::LoopHashLibrary | private |
| backbone_database() const | protocols::loophash::LoopHashLibrary | inline |
| bbdb_ | protocols::loophash::LoopHashLibrary | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::loophash::LoopHashLibrary | inlinevirtual |
| create() | protocols::moves::Mover | virtual |
| create_db() | protocols::loophash::LoopHashLibrary | |
| create_db_ | protocols::loophash::LoopHashLibrary | private |
| db_path_ | protocols::loophash::LoopHashLibrary | private |
| delete_db() | protocols::loophash::LoopHashLibrary | |
| do_sanity_check_ | protocols::loophash::LoopHashLibrary | private |
| extra_ | protocols::loophash::LoopHashLibrary | private |
| extract_data_from_pose(core::pose::Pose &pose, core::Size nres, protocols::frag_picker::VallChunkOP chunk=NULL) | protocols::loophash::LoopHashLibrary | |
| extract_data_from_pose(core::pose::Pose &pose) | protocols::loophash::LoopHashLibrary | |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::loophash::LoopHashLibrary | inlinevirtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_all(core::pose::Pose &pose, std::vector< core::io::silent::SilentStructOP > &lib_structs, core::Size start_res=1, core::Size stop_res=0, core::Real min_bbrms=0.0, core::Real max_bbrms=100000.0, core::Real min_rms=0.0, core::Real max_rms=100.0) | protocols::loophash::LoopHashLibrary | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_extra() const | protocols::loophash::LoopHashLibrary | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::loophash::LoopHashLibrary | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| gethash(core::Size size) | protocols::loophash::LoopHashLibrary | |
| graft_loop(const core::pose::Pose &src_pose, core::pose::Pose &tgt_pose, protocols::loops::Loop myloop) | protocols::loophash::LoopHashLibrary | |
| hash_ | protocols::loophash::LoopHashLibrary | private |
| hash_sizes() const | protocols::loophash::LoopHashLibrary | inline |
| hash_sizes_ | protocols::loophash::LoopHashLibrary | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| load_db() | protocols::loophash::LoopHashLibrary | |
| load_mergeddb() | protocols::loophash::LoopHashLibrary | |
| loopdb_range() | protocols::loophash::LoopHashLibrary | inline |
| loopdb_range_ | protocols::loophash::LoopHashLibrary | private |
| LoopHashLibrary(const utility::vector1< core::Size > &init_sizes=utility::vector1< core::Size >(), const core::Size num_partitions=1, const core::Size assigned_num=0) | protocols::loophash::LoopHashLibrary | |
| mem_foot_print() | protocols::loophash::LoopHashLibrary | |
| merge(LoopHashLibraryOP second_lib, utility::vector1< core::Real > rms_cutoffs) | protocols::loophash::LoopHashLibrary | |
| merge_bbdb(const BackboneDB &second_bbdb, core::Size &index_offset) | protocols::loophash::LoopHashLibrary | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| num_partitions_ | protocols::loophash::LoopHashLibrary | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| options | protocols::loophash::LoopHashLibrary | private |
| options2 | protocols::loophash::LoopHashLibrary | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| save_db() | protocols::loophash::LoopHashLibrary | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_cen_cst | protocols::loophash::LoopHashLibrary | private |
| scorefxn_rama_cst | protocols::loophash::LoopHashLibrary | private |
| set_create_db(bool setting=true) | protocols::loophash::LoopHashLibrary | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_db_path(std::string setting) | protocols::loophash::LoopHashLibrary | inline |
| set_default_score_functions() | protocols::loophash::LoopHashLibrary | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| setup_hash_maps() | protocols::loophash::LoopHashLibrary | |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| sort() | protocols::loophash::LoopHashLibrary | |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_loop_sample(core::pose::Pose &pose, core::Size nres) | protocols::loophash::LoopHashLibrary | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| test_saving_library(core::pose::Pose, core::Size ir, bool deposit) | protocols::loophash::LoopHashLibrary | |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7