| add_fragments(core::fragment::FragSetOP fragset) | protocols::loops::loop_mover::LoopMover | |
| apply(core::pose::Pose &pose) | protocols::loops::loop_mover::IndependentLoopMover | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| clear_fragments() | protocols::loops::loop_mover::LoopMover | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | virtual |
| create() | protocols::moves::Mover | virtual |
| enforce_false_movemap(MoveMapOP &mm) const | protocols::loops::loop_mover::LoopMover | protected |
| false_movemap() const | protocols::loops::loop_mover::LoopMover | |
| false_movemap(MoveMapOP const &mm) | protocols::loops::loop_mover::LoopMover | |
| Filters_map typedef | protocols::moves::Mover | |
| frag_libs() const | protocols::loops::loop_mover::LoopMover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_accept_aborted_loops() const | protocols::loops::loop_mover::IndependentLoopMover | inline |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_all_loops_closed() const | protocols::loops::loop_mover::IndependentLoopMover | inline |
| get_build_all_loops() const | protocols::loops::loop_mover::IndependentLoopMover | inline |
| get_build_attempts() const | protocols::loops::loop_mover::IndependentLoopMover | inline |
| get_checkpoints() | protocols::loops::loop_mover::LoopMover | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_grow_attempts() const | protocols::loops::loop_mover::IndependentLoopMover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_loop_combine_rate() const | protocols::loops::loop_mover::IndependentLoopMover | inline |
| get_max_kic_build_attempts() const | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | inline |
| get_name() const | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_random_order() const | protocols::loops::loop_mover::IndependentLoopMover | inline |
| get_strict_loops() const | protocols::loops::loop_mover::IndependentLoopMover | inline |
| get_type() const | protocols::moves::Mover | inline |
| IndependentLoopMover() | protocols::loops::loop_mover::IndependentLoopMover | |
| IndependentLoopMover(LoopsOP loops_in) | protocols::loops::loop_mover::IndependentLoopMover | |
| IndependentLoopMover(LoopsFileData const &lfd) | protocols::loops::loop_mover::IndependentLoopMover | |
| IndependentLoopMover(GuardedLoopsFromFileOP guarded_loops) | protocols::loops::loop_mover::IndependentLoopMover | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| LoopMover() | protocols::loops::loop_mover::LoopMover | |
| LoopMover(protocols::loops::LoopsOP loops_in) | protocols::loops::loop_mover::LoopMover | |
| LoopMover(protocols::loops::LoopsFileData const &loops_from_file) | protocols::loops::loop_mover::LoopMover | |
| LoopMover(protocols::loops::GuardedLoopsFromFileOP guarded_loops) | protocols::loops::loop_mover::LoopMover | |
| LoopMover(LoopMover const &rhs) | protocols::loops::loop_mover::LoopMover | |
| LoopMover_Perturb_KIC() | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | |
| LoopMover_Perturb_KIC(protocols::loops::LoopsOP loops_in) | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | |
| LoopMover_Perturb_KIC(protocols::loops::LoopsOP loops_in, core::scoring::ScoreFunctionOP scorefxn) | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | |
| loops(protocols::loops::LoopsOP lptr) | protocols::loops::loop_mover::LoopMover | |
| loops(LoopsFileData const &loop_file_data) | protocols::loops::loop_mover::LoopMover | |
| loops(protocols::loops::GuardedLoopsFromFileOP guarded_loops) | protocols::loops::loop_mover::LoopMover | |
| loops() const | protocols::loops::loop_mover::LoopMover | |
| loops() | protocols::loops::loop_mover::LoopMover | |
| max_kic_build_attempts_ | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | private |
| max_seglen_ | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | private |
| model_loop(core::pose::Pose &pose, protocols::loops::Loop const &loop) | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | protectedvirtual |
| MoveMapOP typedef | protocols::loops::loop_mover::LoopMover | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(LoopMover const &rhs) | protocols::loops::loop_mover::LoopMover | |
| protocols::moves::Mover::operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| recover_low_ | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| remodel_kic_attempts_ | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | private |
| reset_status() | protocols::moves::Mover | |
| resolve_loop_indices(core::pose::Pose const &p) | protocols::loops::loop_mover::LoopMover | protected |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn() const | protocols::loops::loop_mover::LoopMover | |
| set_accept_aborted_loops_(bool value) | protocols::loops::loop_mover::IndependentLoopMover | inline |
| set_build_all_loops_(bool value) | protocols::loops::loop_mover::IndependentLoopMover | inline |
| set_build_attempts_(int value) | protocols::loops::loop_mover::IndependentLoopMover | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_default_settings() | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | |
| set_defaults() | protocols::loops::loop_mover::IndependentLoopMover | |
| set_extended_torsions(core::pose::Pose &pose, Loop const &loop) | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | virtual |
| set_grow_attempts_(int value) | protocols::loops::loop_mover::IndependentLoopMover | inline |
| set_guarded_loops_not_in_charge() | protocols::loops::loop_mover::LoopMover | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_loop_combine_rate_(core::Real value) | protocols::loops::loop_mover::IndependentLoopMover | inline |
| set_loops_from_pose_observer_cache(core::pose::Pose const &pose) | protocols::loops::loop_mover::LoopMover | protected |
| set_max_kic_build_attempts(core::Size max_kic_build_attempts) | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_random_order_(bool value) | protocols::loops::loop_mover::IndependentLoopMover | inline |
| set_scorefxn(const core::scoring::ScoreFunctionOP score_in) | protocols::loops::loop_mover::LoopMover | |
| set_strict_loops(bool value) | protocols::loops::loop_mover::IndependentLoopMover | inline |
| set_use_loops_from_observer_cache(bool const loops_from_observer_cache) | protocols::loops::loop_mover::LoopMover | protected |
| show(std::ostream &output=std::cout) const | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| torsion_features_string(core::pose::Pose const &pose) const | protocols::loops::loop_mover::LoopMover | |
| tr() const | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | protectedvirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| use_loops_from_observer_cache() const | protocols::loops::loop_mover::LoopMover | protected |
| ~IndependentLoopMover() | protocols::loops::loop_mover::IndependentLoopMover | virtual |
| ~LoopMover() | protocols::loops::loop_mover::LoopMover | virtual |
| ~LoopMover_Perturb_KIC() | protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC | |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7