Rosetta Protocols: protocols::frag_picker::quota::QuotaSelector Class Reference

Rosetta Protocols 2014.16.56682

selects a given number of fragments using a quota scheme More...

#include <QuotaSelector.hh>

Public Member Functions
	QuotaSelector (Size, Size, QuotaCollectorOP)
	Constructor sets the desired number of fragments. More...

virtual	~QuotaSelector ()

virtual void	select_fragments (ScoredCandidatesVector1 const &in, ScoredCandidatesVector1 &out)
	Selects desired number of fragments from a given candidates. More...

Public Member Functions inherited from protocols::frag_picker::FragmentSelectingRule
	FragmentSelectingRule (Size frags_per_pos)
	Constructor sets the desired number of fragments. More...

Size	frags_per_pos ()
	Says how many fragments will be selected for each position in a query sequence. More...

virtual	~FragmentSelectingRule ()

Protected Member Functions
Size	round (Real x)

Size	next_from_pool (ScoredCandidatesVector1 const &, Size recently_taken, std::set< Size > &in_use)

void	push_the_limits (utility::vector1< Size > &q_limits, Size target_total)

void	push_the_limits_to_the_winner (utility::vector1< Size > &q_limits, Size target_total)

void	push_the_limits (utility::vector1< Size > &, Size, utility::vector1< Real > &)

virtual void	select_fragments_200 (ScoredCandidatesVector1 const &in, ScoredCandidatesVector1 &out)

virtual void	select_fragments_25_200 (ScoredCandidatesVector1 const &in, ScoredCandidatesVector1 &out)

Protected Attributes
QuotaCollectorOP	collector_

Size	q_pos_

Private Attributes
utility::vector1< std::string >	tags_

std::map< std::string, Size >	tag_map_

Detailed Description

selects a given number of fragments using a quota scheme

Constructor & Destructor Documentation

protocols::frag_picker::quota::QuotaSelector::QuotaSelector	(	Size	frags_per_pos,
		Size	pos_in_query,
		QuotaCollectorOP	collector
	)

Constructor sets the desired number of fragments.

References collector_, q_pos_, and protocols::frag_picker::quota::trQuotaSelector.

virtual protocols::frag_picker::quota::QuotaSelector::~QuotaSelector ( )

inlinevirtual

Member Function Documentation

Size protocols::frag_picker::quota::QuotaSelector::next_from_pool	(	ScoredCandidatesVector1 const &	pool,
		Size	recently_taken,
		std::set< Size > &	in_use
	)

protected

References protocols::frag_picker::quota::trQuotaSelector.

Referenced by select_fragments_200(), and select_fragments_25_200().

void protocols::frag_picker::quota::QuotaSelector::push_the_limits	(	utility::vector1< Size > &	q_limits,
		Size	target_total
	)

protected

References protocols::frag_picker::quota::mysorter_biggest_first, protocols::analysis::total, and protocols::frag_picker::quota::trQuotaSelector.

Referenced by select_fragments_200(), and select_fragments_25_200().

void protocols::frag_picker::quota::QuotaSelector::push_the_limits	(	utility::vector1< Size > &	q_limits,
		Size	target_total,
		utility::vector1< Real > &	q_fractions
	)

protected

References protocols::frag_picker::quota::mysorter_missing_fraction_biggest_first, protocols::analysis::total, and protocols::frag_picker::quota::trQuotaSelector.

void protocols::frag_picker::quota::QuotaSelector::push_the_limits_to_the_winner	(	utility::vector1< Size > &	q_limits,
		Size	target_total
	)

protected

References protocols::frag_picker::quota::mysorter_biggest_first, protocols::analysis::total, and protocols::frag_picker::quota::trQuotaSelector.

Size protocols::frag_picker::quota::QuotaSelector::round ( Real x )

inlineprotected

virtual void protocols::frag_picker::quota::QuotaSelector::select_fragments	(	ScoredCandidatesVector1 const &	in,
		ScoredCandidatesVector1 &	out
	)

inlinevirtual

Selects desired number of fragments from a given candidates.

Implements protocols::frag_picker::FragmentSelectingRule.

References select_fragments_25_200().

Referenced by protocols::frag_picker::FragmentPicker::quota_protocol().

void protocols::frag_picker::quota::QuotaSelector::select_fragments_200	(	ScoredCandidatesVector1 const &	in,
		ScoredCandidatesVector1 &	out
	)

protectedvirtual

References collector_, protocols::frag_picker::FragmentSelectingRule::frags_per_pos(), next_from_pool(), push_the_limits(), q_pos_, protocols::analysis::total, and protocols::frag_picker::quota::trQuotaSelector.

void protocols::frag_picker::quota::QuotaSelector::select_fragments_25_200	(	ScoredCandidatesVector1 const &	in,
		ScoredCandidatesVector1 &	out
	)

protectedvirtual

References collector_, protocols::frag_picker::FragmentSelectingRule::frags_per_pos(), protocols::frag_picker::QuotaDebug::log(), protocols::frag_picker::FragmentPicker::log_200_, protocols::frag_picker::FragmentPicker::log_25_, next_from_pool(), push_the_limits(), q_pos_, protocols::frag_picker::QuotaDebug::tag_map_, protocols::analysis::total, and protocols::frag_picker::quota::trQuotaSelector.

Referenced by select_fragments().

Member Data Documentation

QuotaCollectorOP protocols::frag_picker::quota::QuotaSelector::collector_

protected

Referenced by QuotaSelector(), select_fragments_200(), and select_fragments_25_200().

Size protocols::frag_picker::quota::QuotaSelector::q_pos_

protected

Referenced by QuotaSelector(), select_fragments_200(), and select_fragments_25_200().

std::map<std::string,Size> protocols::frag_picker::quota::QuotaSelector::tag_map_

private

utility::vector1<std::string> protocols::frag_picker::quota::QuotaSelector::tags_

private

The documentation for this class was generated from the following files:

symlinks/rosetta/src/protocols/frag_picker/quota/QuotaSelector.hh
symlinks/rosetta/src/protocols/frag_picker/quota/QuotaSelector.cc