AntibodyGraftDesigner.cc File Reference

Class that initially designs antibodies through grafting using an AntibodyDatabase + North_AHO numbering scheme. More...

#include <protocols/antibody/design/AntibodyGraftDesigner.hh>
#include <protocols/antibody/clusters/CDRClusterEnum.hh>
#include <protocols/antibody/clusters/util.hh>
#include <protocols/antibody/AntibodyInfo.hh>
#include <protocols/antibody/AntibodyEnum.hh>
#include <protocols/antibody/util.hh>
#include <protocols/antibody/design/AntibodyDatabaseManager.hh>
#include <protocols/antibody/design/DesignInstructionsParser.hh>
#include <protocols/antibody/design/AntibodyDesignModeler.hh>
#include <protocols/antibody/design/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/util.hh>
#include <core/pose/PDBInfo.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/grafting/AnchoredGraftMover.hh>
#include <protocols/grafting/util.hh>
#include <protocols/forge/methods/chainbreak_eval.hh>
#include <protocols/docking/DockingInitialPerturbation.hh>
#include <protocols/docking/util.hh>
#include <numeric/random/random.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <math.h>
#include <basic/Tracer.hh>
#include <utility/PyAssert.hh>
#include <map>
#include <boost/algorithm/string.hpp>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody
	protocols::antibody::design

Variables
static basic::Tracer	TR ("antibody.design.AntibodyGraftDesinger")
static numeric::random::RandomGenerator	RG (1365421)

Detailed Description

Class that initially designs antibodies through grafting using an AntibodyDatabase + North_AHO numbering scheme.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Variable Documentation

numeric::random::RandomGenerator RG(1365421)

static

basic::Tracer TR("antibody.design.AntibodyGraftDesinger")

static