protocols::frag_picker::scores::SecondarySimilarity Member List

This is the complete list of members for protocols::frag_picker::scores::SecondarySimilarity, including all inherited members.

cache_	protocols::frag_picker::scores::SecondarySimilarity	protected
cached_score(FragmentCandidateOP f, FragmentScoreMapOP empty_map)	protocols::frag_picker::scores::SecondarySimilarity	virtual
cached_scores_id_	protocols::frag_picker::scores::SecondarySimilarity	private
CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)	protocols::frag_picker::scores::CachingScoringMethod	inline
clean_up()	protocols::frag_picker::scores::SecondarySimilarity	inlinevirtual
do_caching(VallChunkOP)	protocols::frag_picker::scores::SecondarySimilarity	virtual
do_caching_simple(VallChunkOP)	protocols::frag_picker::scores::SecondarySimilarity
FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_id()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_min_allowed_score()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_prediction_name()	protocols::frag_picker::scores::SecondarySimilarity	inline
get_priority()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_score_name()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_secondary_prediction()	protocols::frag_picker::scores::SecondarySimilarity	inline
get_use_lowest()	protocols::frag_picker::scores::FragmentScoringMethod	inline
id_	protocols::frag_picker::scores::FragmentScoringMethod	protected
lowest_acceptable_value_	protocols::frag_picker::scores::FragmentScoringMethod	protected
name_	protocols::frag_picker::scores::FragmentScoringMethod	protected
prediction_name_	protocols::frag_picker::scores::SecondarySimilarity	private
priority_	protocols::frag_picker::scores::FragmentScoringMethod	protected
query_len_	protocols::frag_picker::scores::SecondarySimilarity	private
query_ss_	protocols::frag_picker::scores::SecondarySimilarity	private
raw_probs_	protocols::frag_picker::scores::SecondarySimilarity	private
score(FragmentCandidateOP, FragmentScoreMapOP)	protocols::frag_picker::scores::SecondarySimilarity	virtual
scores_	protocols::frag_picker::scores::SecondarySimilarity	protected
SecondarySimilarity(Size priority, Real lowest_acceptable_value, bool use_lowest, core::fragment::SecondaryStructureOP query_prediction, std::string prediction_name, Size sequence_length, utility::vector1< Size > &frag_sizes, Size longest_vall_chunk)	protocols::frag_picker::scores::SecondarySimilarity
set_id(Size id)	protocols::frag_picker::scores::FragmentScoringMethod	inline
set_min_allowed_score(Real lowest_acceptable_value)	protocols::frag_picker::scores::FragmentScoringMethod	inline
use_lowest_	protocols::frag_picker::scores::FragmentScoringMethod	protected
~SecondarySimilarity()	protocols::frag_picker::scores::SecondarySimilarity	inline