protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker Member List

This is the complete list of members for protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker, including all inherited members.

allow_base_pair_only_screen() const	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	inline
allow_base_pair_only_screen_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_pair_axis_cutoff_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_pair_dist_max_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_pair_dist_min_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_pair_planarity_cutoff_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_pair_rho_max_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_pair_rho_min_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_pair_z_offset_cutoff_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_stack_axis_cutoff_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_stack_dist_cutoff_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_stack_planarity_cutoff_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_stack_z_offset_max_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_stack_z_offset_min_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
base_stub_list_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
check_base_pair(core::kinematics::Stub const &moving_residue_base_stub, core::kinematics::Stub const &other_base_stub, core::Real const base_axis_CUTOFF, core::Real const base_planarity_CUTOFF) const	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
check_base_pair(core::kinematics::Stub const &moving_residue_base_stub, core::Real const base_axis_CUTOFF, core::Real const base_planarity_CUTOFF) const	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
check_base_stack(core::kinematics::Stub const &moving_residue_base_stub, core::kinematics::Stub const &other_base_stub, core::Real const base_axis_CUTOFF, core::Real const base_planarity_CUTOFF, bool const verbose=false) const	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
check_base_stack(Size const &pos1, Size const &pos2, bool const verbose=false)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
check_base_stack(core::kinematics::Stub const &moving_res_base, core::Real const base_axis_CUTOFF, core::Real const base_planarity_CUTOFF) const	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
check_base_stack(core::kinematics::Stub const &moving_residue_base_stub, core::kinematics::Stub const &other_base_stub, bool const verbose=false) const	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
check_centroid_interaction(core::kinematics::Stub const &moving_res_base_stub, StepWiseRNA_CountStruct &count_data)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker
check_centroid_interaction(StepWiseRNA_CountStruct &count_data)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
check_centroid_interaction_floating_base(core::kinematics::Stub const &moving_res_base_stub, StepWiseRNA_CountStruct &count_data) const	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
check_that_terminal_res_are_unstacked(bool const verbose=false)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker
fixed_residues_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
floating_base_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
found_centroid_interaction() const	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	inline
found_centroid_interaction_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
Initialize_base_stub_list(core::pose::Pose const &pose, bool const verbose=false)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
Initialize_is_virtual_base(core::pose::Pose const &pose, bool const verbose=false)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
Initialize_terminal_res(core::pose::Pose const &pose)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
is_fixed_res_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
is_medium_base_stack_and_medium_base_pair(core::kinematics::Stub const &moving_res_base) const	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
is_moving_res_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
is_strong_base_stack(core::kinematics::Stub const &moving_res_base) const	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
is_terminal_res_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
is_virtual_base_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
job_parameters_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
moving_residues_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
RNA_BaseCentroidChecker(core::pose::Pose const &pose, StepWiseRNA_JobParametersCOP &job_parameters, bool const tether_jump=false)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker
rna_centroid_info_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
set_allow_base_pair_only_screen(bool const setting)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	inline
set_floating_base(bool const setting)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	inline
stacked_on_terminal_res_in_original_pose_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
terminal_res_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
tether_jump_	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
update_base_stub_list(core::pose::Pose const &pose)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	private
update_base_stub_list_and_check_centroid_interaction(core::pose::Pose const &pose, StepWiseRNA_CountStruct &count_data)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker
update_base_stub_list_and_check_that_terminal_res_are_unstacked(core::pose::Pose const &pose, bool const reinitialize=false)	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker
~RNA_BaseCentroidChecker()	protocols::stepwise::sampling::rna::checker::RNA_BaseCentroidChecker	virtual