#include <EnzFilters.hh>
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| | DiffAtomSasaFilter () |
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| | DiffAtomSasaFilter (core::Size resid1, core::Size resid2, std::string atomname1, std::string atomane2, std::string sample_type) |
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| bool | apply (core::pose::Pose const &pose) const |
| | Returns true if the given pose passes the filter, false otherwise. More...
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| FilterOP | clone () const |
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| FilterOP | fresh_instance () const |
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| void | report (std::ostream &out, core::pose::Pose const &pose) const |
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| core::Real | report_sm (core::pose::Pose const &pose) const |
| | used to report filter internals through a score or silent file More...
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| bool | compute (core::pose::Pose const &pose) const |
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| virtual | ~DiffAtomSasaFilter () |
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| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &pose) |
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| | Filter () |
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| | Filter (std::string const &) |
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| | Filter (Filter const &) |
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| virtual | ~Filter () |
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| virtual std::string | get_type () const |
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| std::string | get_user_defined_name () const |
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| void | set_user_defined_name (std::string const &name) |
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| virtual void | clear () |
| | used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
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| virtual void | apply (core::io::serialization::PipeMap &pmap) |
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| virtual void | score (core::io::serialization::PipeMap &pmap) |
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| virtual core::Real | score (core::pose::Pose &pose) |
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| virtual void | parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks) |
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| virtual std::string | name () const |
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| protocols::enzdes::DiffAtomSasaFilter::DiffAtomSasaFilter |
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inline |
| protocols::enzdes::DiffAtomSasaFilter::~DiffAtomSasaFilter |
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virtual |
| FilterOP protocols::enzdes::DiffAtomSasaFilter::clone |
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const |
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inlinevirtual |
References aname1_, aname2_, core::conformation::Residue::atom_index(), core::pose::Pose::metric(), resid1_, resid2_, core::pose::Pose::residue(), sample_type_, protocols::enzdes::TR, and basic::MetricValue< T >::value().
Referenced by apply(), report(), and report_sm().
| FilterOP protocols::enzdes::DiffAtomSasaFilter::fresh_instance |
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const |
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inlinevirtual |
Reimplemented from protocols::filters::Filter.
References aname1_, aname2_, protocols::ligand_docking::LigandBaseProtocol::get_ligand_id(), core::pose::get_resnum(), core::conformation::Residue::has(), resid1_, resid2_, core::pose::Pose::residue(), runtime_assert, sample_type_, core::pose::Pose::total_residue(), and protocols::enzdes::TR.
| void protocols::enzdes::DiffAtomSasaFilter::report |
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std::ostream & |
out, |
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core::pose::Pose const & |
pose |
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| const |
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virtual |
| std::string protocols::enzdes::DiffAtomSasaFilter::aname1_ |
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private |
| std::string protocols::enzdes::DiffAtomSasaFilter::aname2_ |
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private |
| core::Size protocols::enzdes::DiffAtomSasaFilter::resid1_ |
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private |
| core::Size protocols::enzdes::DiffAtomSasaFilter::resid2_ |
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private |
| std::string protocols::enzdes::DiffAtomSasaFilter::sample_type_ |
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private |
The documentation for this class was generated from the following files: