protocols::forge::build Namespace Reference

Namespaces
	BuildInstructionState
	SegmentInsertConnectionScheme

Classes
class	Bridge
	connect two contiguous but disjoint sections of a Pose into one continuous section More...
class	BuildInstruction
	tracks modifications to be made and is capable of making residue length changes on a Pose More...
class	BuildManager
	a container for managing BuildInstructions More...
class	ConnectRight
	instruction to connect one Pose onto the right side of another More...
struct	CountFromLeft
	count starting from interval().left in a BuildInstruction More...
class	GrowLeft
	instruction to create an n-side extension More...
class	GrowRight
	instruction to create a c-side extension More...
struct	Interval
	simple struct defining a closed interval of residues [left, right] where left <= right More...
class	RelativeConnectRight
	version of ConnectRight instruction that depends upon results from another BuildInstruction More...
struct	RelativeSequencePosition
	computes a position wrt values in given BuildInstruction More...
class	SegmentInsert
	insert an external segment flanked by new regions More...
class	SegmentRebuild
	instruction to rebuild a segment More...
class	SegmentSwap
	instruction to swap a segment with an external segment More...

Typedefs
typedef utility::pointer::owning_ptr < Bridge >	BridgeOP
	owning pointer for Bridge More...
typedef utility::pointer::owning_ptr < Bridge const >	BridgeCOP
	owning pointer for const Bridge More...
typedef utility::pointer::access_ptr < Bridge >	BridgeAP
	access pointer for Bridge More...
typedef utility::pointer::access_ptr < Bridge const >	BridgeCAP
	access pointer for const Bridge More...
typedef utility::pointer::owning_ptr < BuildInstruction >	BuildInstructionOP
	owning pointer for BuildInstruction More...
typedef utility::pointer::owning_ptr < BuildInstruction const >	BuildInstructionCOP
	owning pointer for const BuildInstruction More...
typedef utility::pointer::access_ptr < BuildInstruction >	BuildInstructionAP
	access pointer for BuildInstruction More...
typedef utility::pointer::access_ptr < BuildInstruction const >	BuildInstructionCAP
	access pointer for const BuildInstruction More...
typedef utility::pointer::owning_ptr < BuildManager >	BuildManagerOP
	owning pointer for BuildManager More...
typedef utility::pointer::owning_ptr < BuildManager const >	BuildManagerCOP
	owning pointer for const BuildManager More...
typedef utility::pointer::access_ptr < BuildManager >	BuildManagerAP
	access pointer for BuildManager More...
typedef utility::pointer::access_ptr < BuildManager const >	BuildManagerCAP
	access pointer for const BuildManager More...
typedef utility::pointer::owning_ptr < ConnectRight >	ConnectRightOP
	owning pointer for ConnectRight More...
typedef utility::pointer::owning_ptr < ConnectRight const >	ConnectRightCOP
	owning pointer for const ConnectRight More...
typedef utility::pointer::access_ptr < ConnectRight >	ConnectRightAP
	access pointer for ConnectRight More...
typedef utility::pointer::access_ptr < ConnectRight const >	ConnectRightCAP
	access pointer for const ConnectRight More...
typedef utility::pointer::owning_ptr < GrowLeft >	GrowLeftOP
	owning pointer for GrowLeft More...
typedef utility::pointer::owning_ptr < GrowLeft const >	GrowLeftCOP
	owning pointer for const GrowLeft More...
typedef utility::pointer::access_ptr < GrowLeft >	GrowLeftAP
	access pointer for GrowLeft More...
typedef utility::pointer::access_ptr < GrowLeft const >	GrowLeftCAP
	access pointer for const GrowLeft More...
typedef utility::pointer::owning_ptr < GrowRight >	GrowRightOP
	owning pointer for GrowRight More...
typedef utility::pointer::owning_ptr < GrowRight const >	GrowRightCOP
	owning pointer for const GrowRight More...
typedef utility::pointer::access_ptr < GrowRight >	GrowRightAP
	access pointer for GrowRight More...
typedef utility::pointer::access_ptr < GrowRight const >	GrowRightCAP
	access pointer for const GrowRight More...
typedef utility::pointer::owning_ptr < RelativeConnectRight >	RelativeConnectRightOP
	owning pointer for RelativeConnectRight More...
typedef utility::pointer::owning_ptr < RelativeConnectRight const >	RelativeConnectRightCOP
	owning pointer for const RelativeConnectRight More...
typedef utility::pointer::access_ptr < RelativeConnectRight >	RelativeConnectRightAP
	access pointer for RelativeConnectRight More...
typedef utility::pointer::access_ptr < RelativeConnectRight const >	RelativeConnectRightCAP
	access pointer for const RelativeConnectRight More...
typedef utility::pointer::owning_ptr < RelativeSequencePosition >	RelativeSequencePositionOP
	owning pointer for RelativeSequencePosition More...
typedef utility::pointer::owning_ptr < RelativeSequencePosition const >	RelativeSequencePositionCOP
	owning pointer for const RelativeSequencePosition More...
typedef utility::pointer::access_ptr < RelativeSequencePosition >	RelativeSequencePositionAP
	access pointer for RelativeSequencePosition More...
typedef utility::pointer::access_ptr < RelativeSequencePosition const >	RelativeSequencePositionCAP
	access pointer for const RelativeSequencePosition More...
typedef utility::pointer::owning_ptr < CountFromLeft >	CountFromLeftOP
	owning pointer for CountFromLeft More...
typedef utility::pointer::owning_ptr < CountFromLeft const >	CountFromLeftCOP
	owning pointer for const CountFromLeft More...
typedef utility::pointer::access_ptr < CountFromLeft >	CountFromLeftAP
	access pointer for CountFromLeft More...
typedef utility::pointer::access_ptr < CountFromLeft const >	CountFromLeftCAP
	access pointer for const CountFromLeft More...
typedef utility::pointer::owning_ptr < SegmentInsert >	SegmentInsertOP
	owning pointer for SegmentInsert More...
typedef utility::pointer::owning_ptr < SegmentInsert const >	SegmentInsertCOP
	owning pointer for const SegmentInsert More...
typedef utility::pointer::access_ptr < SegmentInsert >	SegmentInsertAP
	access pointer for SegmentInsert More...
typedef utility::pointer::access_ptr < SegmentInsert const >	SegmentInsertCAP
	access pointer for const SegmentInsert More...
typedef utility::pointer::owning_ptr < SegmentRebuild >	SegmentRebuildOP
	owning pointer for SegmentRebuild More...
typedef utility::pointer::owning_ptr < SegmentRebuild const >	SegmentRebuildCOP
	owning pointer for const SegmentRebuild More...
typedef utility::pointer::access_ptr < SegmentRebuild >	SegmentRebuildAP
	access pointer for SegmentRebuild More...
typedef utility::pointer::access_ptr < SegmentRebuild const >	SegmentRebuildCAP
	access pointer for const SegmentRebuild More...
typedef utility::pointer::owning_ptr < SegmentSwap >	SegmentSwapOP
	owning pointer for SegmentSwap More...
typedef utility::pointer::owning_ptr < SegmentSwap const >	SegmentSwapCOP
	owning pointer for const SegmentSwap More...
typedef utility::pointer::access_ptr < SegmentSwap >	SegmentSwapAP
	access pointer for SegmentSwap More...
typedef utility::pointer::access_ptr < SegmentSwap const >	SegmentSwapCAP
	access pointer for const SegmentSwap More...

Variables
static basic::Tracer	TR ("protocols.forge.build.BuildInstruction")
static basic::Tracer	TR ("protocols.forge.build.BuildManager")
static numeric::random::RandomGenerator	RG (101381274)
static basic::Tracer	TR ("protocols.forge.build.SegmentInsert")
static numeric::random::RandomGenerator	RG (313222)

Typedef Documentation

typedef utility::pointer::access_ptr< Bridge > protocols::forge::build::BridgeAP

access pointer for Bridge

typedef utility::pointer::access_ptr< Bridge const > protocols::forge::build::BridgeCAP

access pointer for const Bridge

typedef utility::pointer::owning_ptr< Bridge const > protocols::forge::build::BridgeCOP

owning pointer for const Bridge

typedef utility::pointer::owning_ptr< Bridge > protocols::forge::build::BridgeOP

owning pointer for Bridge

typedef utility::pointer::access_ptr< BuildInstruction > protocols::forge::build::BuildInstructionAP

access pointer for BuildInstruction

typedef utility::pointer::access_ptr< BuildInstruction const > protocols::forge::build::BuildInstructionCAP

access pointer for const BuildInstruction

typedef utility::pointer::owning_ptr< BuildInstruction const > protocols::forge::build::BuildInstructionCOP

owning pointer for const BuildInstruction

typedef utility::pointer::owning_ptr< BuildInstruction > protocols::forge::build::BuildInstructionOP

owning pointer for BuildInstruction

typedef utility::pointer::access_ptr< BuildManager > protocols::forge::build::BuildManagerAP

access pointer for BuildManager

typedef utility::pointer::access_ptr< BuildManager const > protocols::forge::build::BuildManagerCAP

access pointer for const BuildManager

typedef utility::pointer::owning_ptr< BuildManager const > protocols::forge::build::BuildManagerCOP

owning pointer for const BuildManager

typedef utility::pointer::owning_ptr< BuildManager > protocols::forge::build::BuildManagerOP

owning pointer for BuildManager

typedef utility::pointer::access_ptr< ConnectRight > protocols::forge::build::ConnectRightAP

access pointer for ConnectRight

typedef utility::pointer::access_ptr< ConnectRight const > protocols::forge::build::ConnectRightCAP

access pointer for const ConnectRight

typedef utility::pointer::owning_ptr< ConnectRight const > protocols::forge::build::ConnectRightCOP

owning pointer for const ConnectRight

typedef utility::pointer::owning_ptr< ConnectRight > protocols::forge::build::ConnectRightOP

owning pointer for ConnectRight

typedef utility::pointer::access_ptr< CountFromLeft > protocols::forge::build::CountFromLeftAP

access pointer for CountFromLeft

typedef utility::pointer::access_ptr< CountFromLeft const > protocols::forge::build::CountFromLeftCAP

access pointer for const CountFromLeft

typedef utility::pointer::owning_ptr< CountFromLeft const > protocols::forge::build::CountFromLeftCOP

owning pointer for const CountFromLeft

typedef utility::pointer::owning_ptr< CountFromLeft > protocols::forge::build::CountFromLeftOP

owning pointer for CountFromLeft

typedef utility::pointer::access_ptr< GrowLeft > protocols::forge::build::GrowLeftAP

access pointer for GrowLeft

typedef utility::pointer::access_ptr< GrowLeft const > protocols::forge::build::GrowLeftCAP

access pointer for const GrowLeft

typedef utility::pointer::owning_ptr< GrowLeft const > protocols::forge::build::GrowLeftCOP

owning pointer for const GrowLeft

typedef utility::pointer::owning_ptr< GrowLeft > protocols::forge::build::GrowLeftOP

owning pointer for GrowLeft

typedef utility::pointer::access_ptr< GrowRight > protocols::forge::build::GrowRightAP

access pointer for GrowRight

typedef utility::pointer::access_ptr< GrowRight const > protocols::forge::build::GrowRightCAP

access pointer for const GrowRight

typedef utility::pointer::owning_ptr< GrowRight const > protocols::forge::build::GrowRightCOP

owning pointer for const GrowRight

typedef utility::pointer::owning_ptr< GrowRight > protocols::forge::build::GrowRightOP

owning pointer for GrowRight

typedef utility::pointer::access_ptr< RelativeConnectRight > protocols::forge::build::RelativeConnectRightAP

access pointer for RelativeConnectRight

typedef utility::pointer::access_ptr< RelativeConnectRight const > protocols::forge::build::RelativeConnectRightCAP

access pointer for const RelativeConnectRight

typedef utility::pointer::owning_ptr< RelativeConnectRight const > protocols::forge::build::RelativeConnectRightCOP

owning pointer for const RelativeConnectRight

typedef utility::pointer::owning_ptr< RelativeConnectRight > protocols::forge::build::RelativeConnectRightOP

owning pointer for RelativeConnectRight

typedef utility::pointer::access_ptr< RelativeSequencePosition > protocols::forge::build::RelativeSequencePositionAP

access pointer for RelativeSequencePosition

typedef utility::pointer::access_ptr< RelativeSequencePosition const > protocols::forge::build::RelativeSequencePositionCAP

access pointer for const RelativeSequencePosition

typedef utility::pointer::owning_ptr< RelativeSequencePosition const > protocols::forge::build::RelativeSequencePositionCOP

owning pointer for const RelativeSequencePosition

typedef utility::pointer::owning_ptr< RelativeSequencePosition > protocols::forge::build::RelativeSequencePositionOP

owning pointer for RelativeSequencePosition

typedef utility::pointer::access_ptr< SegmentInsert > protocols::forge::build::SegmentInsertAP

access pointer for SegmentInsert

typedef utility::pointer::access_ptr< SegmentInsert const > protocols::forge::build::SegmentInsertCAP

access pointer for const SegmentInsert

typedef utility::pointer::owning_ptr< SegmentInsert const > protocols::forge::build::SegmentInsertCOP

owning pointer for const SegmentInsert

typedef utility::pointer::owning_ptr< SegmentInsert > protocols::forge::build::SegmentInsertOP

owning pointer for SegmentInsert

typedef utility::pointer::access_ptr< SegmentRebuild > protocols::forge::build::SegmentRebuildAP

access pointer for SegmentRebuild

typedef utility::pointer::access_ptr< SegmentRebuild const > protocols::forge::build::SegmentRebuildCAP

access pointer for const SegmentRebuild

typedef utility::pointer::owning_ptr< SegmentRebuild const > protocols::forge::build::SegmentRebuildCOP

owning pointer for const SegmentRebuild

typedef utility::pointer::owning_ptr< SegmentRebuild > protocols::forge::build::SegmentRebuildOP

owning pointer for SegmentRebuild

typedef utility::pointer::access_ptr< SegmentSwap > protocols::forge::build::SegmentSwapAP

access pointer for SegmentSwap

typedef utility::pointer::access_ptr< SegmentSwap const > protocols::forge::build::SegmentSwapCAP

access pointer for const SegmentSwap

typedef utility::pointer::owning_ptr< SegmentSwap const > protocols::forge::build::SegmentSwapCOP

owning pointer for const SegmentSwap

typedef utility::pointer::owning_ptr< SegmentSwap > protocols::forge::build::SegmentSwapOP

owning pointer for SegmentSwap

Variable Documentation

numeric::random::RandomGenerator protocols::forge::build::RG(101381274)

static

Referenced by protocols::forge::build::SegmentRebuild::modify_impl(), and protocols::forge::build::SegmentInsert::modify_impl().

numeric::random::RandomGenerator protocols::forge::build::RG(313222)

static

basic::Tracer protocols::forge::build::TR("protocols.forge.build.BuildInstruction")

static

Referenced by protocols::forge::build::BuildInstruction::compatible_with(), protocols::forge::build::SegmentInsert::insert_pose_torsion_override_movemap(), protocols::forge::build::BuildManager::modify(), and protocols::forge::build::SegmentInsert::SegmentInsert().

basic::Tracer protocols::forge::build::TR("protocols.forge.build.SegmentInsert")

static

basic::Tracer protocols::forge::build::TR("protocols.forge.build.BuildManager")

static