#include <core/pose/Pose.fwd.hh>
#include <core/id/AtomID_Map.fwd.hh>
#include <core/id/AtomID.fwd.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/types.hh>
#include <core/fragment/ConstantLengthFragSet.fwd.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.

	protocols::stepwise

	protocols::stepwise::sampling

	protocols::stepwise::sampling::protein

Functions
Real	protocols::stepwise::sampling::protein::get_rotamer_angle (core::Size const &i, core::Size const &N_SAMPLE)

void	protocols::stepwise::sampling::protein::output_silent_struct (core::pose::Pose const &pose, core::pose::PoseCOP const &native_pose_op, std::string const &silent_file, std::string const &tag, core::io::silent::SilentFileDataOP sfd_in)

void	protocols::stepwise::sampling::protein::output_silent_struct (core::pose::Pose const &pose, core::pose::PoseCOP const &native_pose_op, std::string const &silent_file, std::string const &tag, core::io::silent::SilentFileDataOP sfd_in, utility::vector1< core::Size > const &calc_rms_res)

void	protocols::stepwise::sampling::protein::remove_end_variants (core::pose::Pose &pose)

Real	protocols::stepwise::sampling::protein::get_pretend_psi_explicit (core::pose::Pose const &pose, Size const &res)

Real	protocols::stepwise::sampling::protein::get_pretend_phi_explicit (core::pose::Pose const &pose, Size const &res)

void	protocols::stepwise::sampling::protein::setup_protein_CA_atom_id_map (core::pose::Pose const &pose_1, core::pose::Pose const &pose_2, Size const base_res, core::id::AtomID_Map< core::id::AtomID > &atom_ID_map)

void	protocols::stepwise::sampling::protein::setup_protein_backbone_atom_id_map (core::pose::Pose const &pose_1, core::pose::Pose const &pose_2, Size const base_res, core::id::AtomID_Map< core::id::AtomID > &atom_ID_map)

void	protocols::stepwise::sampling::protein::setup_protein_backbone_atom_id_map (core::pose::Pose const &pose_1, core::pose::Pose const &pose_2, Size const base_res, Size const base_res2, core::id::AtomID_Map< core::id::AtomID > &atom_ID_map)

Namespaces

Functions