| apply(core::pose::Pose &pose_to_visualize) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| check_phosphate_contacts_donor(pose::Pose &pose) const | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| do_screening_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| donor_atom_xyz_list_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| donor_base_atom_xyz_list_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| Filters_map typedef | protocols::moves::Mover | |
| force_phosphate_instantiation_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_variables() | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| instantiated_phosphate() const | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | inline |
| instantiated_phosphate_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| neighbor_copy_dofs_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| number_score_calls_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| op1_atom_idx_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| op2_atom_idx_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| pass_clash_check(std::string const atom_name, Size const n, pose::Pose &pose) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| phosphate_move_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| PhosphateMover(Size const sample_res, PhosphateTerminus which_terminus_, scoring::ScoreFunctionOP scorefxn) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | |
| PhosphateMover(PhosphateMove const phosphate_move, scoring::ScoreFunctionOP scorefxn) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | |
| Pose typedef | protocols::moves::Mover | |
| pose_free_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| screen_five_prime_phosphate(pose::Pose &pose) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| screen_for_donor_contact_ | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| screen_phosphate(pose::Pose &pose) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | |
| screen_three_prime_phosphate(pose::Pose &pose) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| setup_atom_and_neighbor_list(pose::Pose &pose) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| setup_variants_and_free_pose_for_five_prime_phosphate(pose::Pose &pose) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| setup_variants_and_free_pose_for_terminal_phosphate(pose::Pose &pose) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| setup_variants_and_free_pose_for_three_prime_phosphate(pose::Pose &pose) | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~Mover() | protocols::moves::Mover | virtual |
| ~PhosphateMover() | protocols::stepwise::sampling::rna::phosphate::PhosphateMover | |
1.8.7