| add(core::io::silent::SilentStruct const &, std::string new_tag="keep_silent_tag") | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| add(core::pose::Pose const &, std::string new_tag) | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| add(ObjexxFCL::FArray2D_double const &, core::Size nres, std::string new_tag) | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| Address typedef | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| address_to_buf(Address &addr, int *addr_buf, core::Size index) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| address_to_string(Address &address_buf, core::Size index, std::string &address_tag) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| any_node_finished() | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| assign_tag(std::string const &address_tag, core::Size assigned_id_num, std::string &newtag) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| assign_tag(Address &address_tag, core::Size assigned_id_num, std::string &newtag) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| best_address_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| buf_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| buf_to_address(Address &addr, int *addr_buf, core::Size index) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| clear() | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| coords() const | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | inlineprotected |
| create_comm(int *ranks_to_include, int new_size) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| current_address_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| current_address_str_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| current_best_rmsds_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| current_trajectory_state_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| evaluate(core::pose::Pose const &, std::string &best_decoy, core::Real &best_rmsd) const | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| evaluate(core::io::silent::SilentStruct const &, std::string &best_decoy, core::Real &best_rmsd) const | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| evaluate(ObjexxFCL::FArray2D_double &, std::string &best_decoy, core::Real &best_rmsd) const | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| evaluate(ObjexxFCL::FArray2D_double &, std::string &best_decoy, core::Real &best_rmsd, core::Size index) const | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| evaluate_and_add(core::pose::Pose const &pose, std::string &best_decoy, core::Real &best_rmsd) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD::evaluate_and_add(core::pose::Pose const &pose, std::string &cluster_center, core::Real &best_rmsd, core::Real transition_threshold) | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | virtual |
| protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD::evaluate_and_add(ObjexxFCL::FArray2D_double &coords, std::string &best_decoy, core::Real &best_rmsd, core::Real transition_threshold) | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| finalize() | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | virtual |
| find_address(Address &query_addr, utility::vector1< Address > &address_database) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| first_time_writing_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| get(core::Size index, ObjexxFCL::FArray2D_double &result) | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| get_discovered_out() | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| get_next_candidate() | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| get_nresidues() | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| get_tag(core::Size index) | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| hlevel_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| initialize() | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| is_in_neighborhood(Address &q_address, Address &ref_address) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| is_my_structure() | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| is_new_structure(Address &address, utility::vector1< core::Real > &radii, utility::vector1< core::Real > &rmsds) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| is_new_structure(Address &address, utility::vector1< core::Real > &radii, core::Real &rmsds) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| level_radii_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| max_cache_size(core::Size max_cache) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| MPIHPool_RMSD(std::string const &silent_file, core::Size levels) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| natom() const | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | inlineprotected |
| new_decoys_out_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| nlevels_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| npes_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| nresidues_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| num_structures_added_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| pool_npes_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| pool_rank_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| Pool_RMSD(std::string silent_file) | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | inline |
| Pool_RMSD() | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | inline |
| pool_size_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| pop_back() | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| prepare_send_new_coords(bool send_coords) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| print_address(Address &addr) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| rank_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| receive_and_output_structures(core::io::silent::SilentFileData &, core::Size num_structures_to_write) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| receive_silent_struct_any_source(core::io::silent::SilentFileData &, core::io::silent::SilentStructOP &ss, Address &ss_addr, core::Size &new_level) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| resolve_address_and_assign_tag(Address &new_addr, core::Size &new_level_start, std::string &new_candidate_tag) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| resolved_level_best_rmsd(Address &addr, utility::vector1< core::Real > &rmsd) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| scan_output_and_setup_to_receive() | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| send_receive_and_write_structures(bool winning_rank, core::pose::Pose const &pose) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| send_silent_struct_to_rank(core::io::silent::SilentFileData &, core::io::silent::SilentStructOP &ss, Address &ss_addr, core::Size &new_level_begins) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| send_silent_struct_to_rank(core::io::silent::SilentFileData &, core::io::silent::SilentStructOP &ss, Address &ss_addr, core::Size &new_level_begins, core::Size rank) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| set_discovered_out(std::string const &newout) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| set_excluded_residues(utility::vector1< core::Size > const &excluded_residues) | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| set_nresidues(core::Size nres) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| set_reserve_size(int max_size) | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | |
| set_transition_threshold(core::Real threshold) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | |
| size() const | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | inline |
| string_to_address(Address &address_buf, core::Size index, std::string &address_tag) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| tag(core::Size index) const | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | inlineprotected |
| tracer_visible_ | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| update_comm(core::Size newsize) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| write_decoys_to_hierarchy(core::io::silent::SilentFileData &sfd, core::io::silent::SilentStructOP &ss, Address &ss_addr, core::Size new_level_begins) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| write_headers_to_hierarchy(core::io::silent::SilentStructOP &ss) | protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD | private |
| ~Pool_RMSD() | protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD | virtual |
1.8.7